Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu06g0732 ATGGTAATGGACTCTCTTAGCAGAATTTTAACATTGGCGGCGAACCCCGATTACATCAGCGGGTACAAAGATGATTTAAACTCTATCAACATCAATCATTTTTTATTTGCGGATGATACAATCCTTTTTACAATTAACAAAGAGGAAGAGATTGATGATCTTGTCAATTTGGTTAGCCTCTACGAGCATACCTCATGTCTCAACATTAATAGACATAAATCAGAATTCTTGGGAATCCACTGTGAAGCGGCATGGATGGAATACATTGCTAACAAATATGAATGCAAAGTGGAGAAAGAAATCAGGGATGACGTTGAAAAGGATGCAGTTGATGAAACTGAATATTATGCATGGAATGAGTTGAGACTCCATCCTTTGCTTATGAAATCGATCTACAAACTTGGGTTTAAGGAACCTACAGCAATCCAGAAAGCTTGTATTCCAGCTGCTGCTTACCAGGGGAAGGATGTTGTTGGTGCTGCTGAGACAGGATCTGGAAAAACACTAGCTTTTGGATTGCCAATCCTACAACGTTTCTTGGATGAACGAGAGAAATCTGGAAAGATGTCTGAAGAAAAAGGAGTAGATGCAAAAAGATATGCTCCCAGAAGTCTTCTACGGGCTCTAATTATTACTCCTACTAGAGAACTTGCTCTTCAGGTTACTGATCATCTCAAGGCAGTCGCAGTAGGTACAGATATCAGGGTGGTTCCAATCGTTGGTGGGATGTCCACTGAAAAGCAGGAAAGGCTTTTAAGGATGAGGCCAGAGGTTGTAGTTGGAACTCCAGGACGGTTGTGGGAACTTATGTCAGGAGGAGAGAAGCATCTTGTTGAGTTGCAGACATTGTCTTTCTTTGTGCTGGATGAGGCTGATAGGATGATAGAAAATGGCCACTTTCGTGAGTTGCAGTCCATAATTGATATGCTTCCTGTGACCCATGGTTCTGCAGAAAATTTACAAAATGCAGAAAACTCTTTGACCTCTGCAAGTTCTCAAAGAAAGAAAAGACAAACACTTGTGTTTTCTGCTACATTGTCACTATCTTCTGATTTCCGTAAGAAACTAAAGCGTGGATCATCAAGACCTAATCAATTGGGGATGGATGGTTTGAATTCTATAGAGGCTCTATCTGAGAGAGCTGGGATAAGACCTAATGTTGCTATTATAAATCTGACAAACACGTCGGTCTTGGCAAATAATCTTGAAGAATCATTTATAGAATGCAGGGAAGAAGACAAAGATGCTTATTTGTATTACGTTCTATCTGTTTATGGACAAGGCCGCACTATTGTGTTCTGTACATCCATTGCTGCATTACGGCATATTGCTGCTTTATTATCCATTGTTGGTGTTAATGTCTTGACTCTTCATGCTCAAAGGCAGCAACGAGCACGCTTGAAGGCAATTGATCGTTTCCGTGGAAGTCAAAATGGGATACTGATTGCCACTGATGTTGCGGCTAGAGGCCTTGATATTCCTGGTGTTCGAACTGTTGTCCACTATCAACTACCACATTCGGCTGAGGTTTATGTTCATAGAAGTGGAAGAACAGCCAGAGCTTCTGCTGATGGATGCAGTATTGCGTTGGTCTCAGCCAATGAAACTTCCAAATTTGCATCTCTATGCAAATCATTCTCTAAGGAAAGCTTCCAGCGATTTCCTGTTGATAATTCATACATGCCAGAGGTTCTAAAACGTTTGTCTCTTGCACGCCAGATTGACAAGATTCTGCGGAAGCATTCCCAGGAGAAGGCAAGTAAAACCTGGTTTGAGCGGAATGCGGAGTTGGTGGAATTAGTTGTGGACAACGATGACAGTGAAGAGGAGAGAGTAAACAATTATAAGCAGAAGAAATCTGGCTCCATTCAGTTAAAGAAATTGCAGCAGGAGCTCGACATGCTGCTTTCCCACCCTCTGCAACCAAAATCATTTTCACATCGATATTTGGCTGGTGCTGGGGTGTCACCTCTTCTGCAACATCAATTTGAAGAACTGGCCAAGCAGAATAATGCATCTGTTCAGAATATGGGAGATAACAAAAGGAGGAAGTTGGCTGCTTTTGGTCAAGATCTTACAGAACCACTTCAAGCACTTCGAACTGGTGGTCAACAGGTACATATGGATGCAAAAGAGATGGCTGAGAAACGGAGGAAAATGGAGAACCTTAGGAGAAAGAGAAAAGAGGAGAAAAAACGCTTGCGTGATCAGCGGAGAAATAAACGGAAACAAATGAAAGGCAAGATTTAG 2250 41.73 MVMDSLSRILTLAANPDYISGYKDDLNSININHFLFADDTILFTINKEEEIDDLVNLVSLYEHTSCLNINRHKSEFLGIHCEAAWMEYIANKYECKVEKEIRDDVEKDAVDETEYYAWNELRLHPLLMKSIYKLGFKEPTAIQKACIPAAAYQGKDVVGAAETGSGKTLAFGLPILQRFLDEREKSGKMSEEKGVDAKRYAPRSLLRALIITPTRELALQVTDHLKAVAVGTDIRVVPIVGGMSTEKQERLLRMRPEVVVGTPGRLWELMSGGEKHLVELQTLSFFVLDEADRMIENGHFRELQSIIDMLPVTHGSAENLQNAENSLTSASSQRKKRQTLVFSATLSLSSDFRKKLKRGSSRPNQLGMDGLNSIEALSERAGIRPNVAIINLTNTSVLANNLEESFIECREEDKDAYLYYVLSVYGQGRTIVFCTSIAALRHIAALLSIVGVNVLTLHAQRQQRARLKAIDRFRGSQNGILIATDVAARGLDIPGVRTVVHYQLPHSAEVYVHRSGRTARASADGCSIALVSANETSKFASLCKSFSKESFQRFPVDNSYMPEVLKRLSLARQIDKILRKHSQEKASKTWFERNAELVELVVDNDDSEEERVNNYKQKKSGSIQLKKLQQELDMLLSHPLQPKSFSHRYLAGAGVSPLLQHQFEELAKQNNASVQNMGDNKRRKLAAFGQDLTEPLQALRTGGQQVHMDAKEMAEKRRKMENLRRKRKEEKKRLRDQRRNKRKQMKGKI 749
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8560062 8570392 - CmPI595203_06g007320.1 Cmu06g0732 418392

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu06g0732 749 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 84 747 IPR050079 -
Cmu06g0732 749 Gene3D - 391 635 IPR027417 -
Cmu06g0732 749 CDD SF2_C_DEAD 402 531 - -
Cmu06g0732 749 MobiDBLite consensus disorder prediction 720 749 - -
Cmu06g0732 749 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 43 309 IPR027417 -
Cmu06g0732 749 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 401 569 IPR001650 -
Cmu06g0732 749 SMART ultradead3 135 377 IPR014001 -
Cmu06g0732 749 Gene3D - 83 366 IPR027417 -
Cmu06g0732 749 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 207 537 IPR027417 -
Cmu06g0732 749 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 287 295 IPR000629 -
Cmu06g0732 749 MobiDBLite consensus disorder prediction 709 749 - -
Cmu06g0732 749 SMART helicmild6 441 522 IPR001650 -
Cmu06g0732 749 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 116 144 IPR014014 GO:0003724(InterPro)
Cmu06g0732 749 CDD DEADc_DDX24 127 390 - -
Cmu06g0732 749 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 148 364 IPR014001 -
Cmu06g0732 749 Coils Coil 706 744 - -
Cmu06g0732 749 Pfam DEAD/DEAH box helicase 140 347 IPR011545 GO:0003676(InterPro)|GO:0005524(InterPro)
Cmu06g0732 749 Pfam Helicase conserved C-terminal domain 414 521 IPR001650 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu06g0732 K14805 - - csv:101209958 1183.7
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu05g1068 Cmu-Chr5:10013281 Cmu06g0732 Cmu-Chr6:8560062 2.10E-07 dispersed
Cmu06g0732 Cmu-Chr6:8560062 Cmu09g1008 Cmu-Chr9:10146666 1.80E-53 dispersed
Cmu06g0732 Cmu-Chr6:8560062 Cmu10g1186 Cmu-Chr10:4541451 8.00E-30 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g808 Blo01g00306 . . Bda08g00011 . . . Bma05g01262 Cmo08g01023 . . . . . . . . . . . . . . . Cla06g00708 Cam06g0758 Cec06g0764 Cco06g0776 Clacu06g0749 Cmu06g0732 Cre06g1509 . . . . . Csa02g01016 Chy05g00280 . . . . . Bpe05g01117 . . . . . . Cma08g01052 . Car08g00929 . . Cpe17g00224 . . . . . . . . . . . . . . Lsi09g01183 . . Cme05g00630
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011338 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 31