Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu06g0763 ATGGCGGCACTTAGTAAATGGCATTCTCTCTCTCTGTTTGCCCTTGCATTGGTGTTCTTCGTAACAATCGCTCTCGTTCTCAAAGAAGAGACCTCTGAAATTCGGACTGTGTTAGCGACGGAGTTTCAGAGCTCTAGCAACTCATCAATGGCGATTAGGCTGGAAAGTGATGATATGGAGCAAGAATTCAACAATGAACATGCTGTGGATAATCCTGACGAGATTGCTGCCTCTGTTGAGATGAGTATCCGTAATAGCACTGAAAGGAGGAAGTTGGGATTCTTCTCCTGTGGAACAGGCAATCCCATTGATGACTGCTGGCGTTGTGACTCCAATTGGCACCGCAACCGGAAGCGCCTTGCGGAATGTGGCATTGGGTTTGGTCGGAATGCTATTGGTGGACGTGATGGTCGTTTCTATGTCGTAACTGATTCGAGTGACAACGATCCAGTGAACCCGAAGCCAGGGACTCTTCGTCATGCTGTCATTCAAGAGAAACCTCTTTGGATTGTGTTCAAAAGGGACATGGTGATTCAATTGAAACAGGAGCTCATCATGAACAGTTTTAAGACAATTGATGCTCGAGGGGTAAATGTACATATTGCCAATGGCGCTTGCATCACAATCCAGTTTGTGACTAACATCATTATCCATGGTCTTCACATCCATGATTGCAAGCCCACAGGAAATGCCATGGTGAGAAGCTCTCCAACTCATTTTGGGTGGAGAACCATGGCTGATGGAGATGCCATTTCCATCTTTGGGTCTAGTCATATATGGATTGATCACAATTCACTCTCTAATTGTGCTGATGGACTTGTTGATGCTGTCATGGGCTCAACTGCAATCACAATCTCCAACAATCACTTCACTCACCACAATGAGGTGATGCTTCTGGGCCATAGTGATTCCTACACAAAGGACAAGCAAATGCAAGTCACCATTGCTTATAACCATTTTGGAGAGGGGCTCATTCAAAGAATGCCAAGATGTAGGCATGGCTATTTCCATGTGGTGAACAATGACTATACTCACTGGGAGATGTATGCCATTGGTGGGAGTGCAAACCCCACCATCAATAGTCAAGGCAACAGATATGCTGCACCAACCAACCCTTTTGCCAAAGAGGTGACGAAGCGAGTCGAAACACCAGAGAGCGAATGGAAGGGGTGGAATTGGAGATCAGAAGGAGATATGTTGTTGAATGGTGCTTATTTCACTCCATCAGGTGCTGGAGCTTCAGCAAGCTATGCCAGAGCCTCCAGCTTAGGAGCCAAATCTGCTTCCATGGTTGGCTCCATTACTTCTTCTGCAGCCTGTTCACACCGCCGTTCCGCCGCTCTAGATTCGATCCGTTCACACCCTGTCGACTACCGCTTCACTGCTTTCGTCAATAACCGTGGCTTAGATCCGTTCGAGAAGAATGCGTTCGCACTACTTGCTTGA 1446 46.89 MAALSKWHSLSLFALALVFFVTIALVLKEETSEIRTVLATEFQSSSNSSMAIRLESDDMEQEFNNEHAVDNPDEIAASVEMSIRNSTERRKLGFFSCGTGNPIDDCWRCDSNWHRNRKRLAECGIGFGRNAIGGRDGRFYVVTDSSDNDPVNPKPGTLRHAVIQEKPLWIVFKRDMVIQLKQELIMNSFKTIDARGVNVHIANGACITIQFVTNIIIHGLHIHDCKPTGNAMVRSSPTHFGWRTMADGDAISIFGSSHIWIDHNSLSNCADGLVDAVMGSTAITISNNHFTHHNEVMLLGHSDSYTKDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYAAPTNPFAKEVTKRVETPESEWKGWNWRSEGDMLLNGAYFTPSGAGASASYARASSLGAKSASMVGSITSSAACSHRRSAALDSIRSHPVDYRFTAFVNNRGLDPFEKNAFALLA 481
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9141077 9149212 - CmPI595203_06g007630.1 Cmu06g0763 418423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu06g0763 481 FunFam Pectate lyase 100 441 - -
Cmu06g0763 481 Pfam Pectate lyase 187 364 IPR002022 -
Cmu06g0763 481 SUPERFAMILY Pectin lyase-like 77 418 IPR011050 -
Cmu06g0763 481 PRINTS Pollen allergen Amb family signature 123 140 IPR018082 -
Cmu06g0763 481 PRINTS Pollen allergen Amb family signature 183 199 IPR018082 -
Cmu06g0763 481 PRINTS Pollen allergen Amb family signature 391 415 IPR018082 -
Cmu06g0763 481 PRINTS Pollen allergen Amb family signature 327 346 IPR018082 -
Cmu06g0763 481 PRINTS Pollen allergen Amb family signature 349 368 IPR018082 -
Cmu06g0763 481 PRINTS Pollen allergen Amb family signature 247 268 IPR018082 -
Cmu06g0763 481 PRINTS Pollen allergen Amb family signature 420 443 IPR018082 -
Cmu06g0763 481 PRINTS Pollen allergen Amb family signature 147 172 IPR018082 -
Cmu06g0763 481 SMART amb_all 175 372 IPR002022 -
Cmu06g0763 481 Gene3D - 100 441 IPR012334 -
Cmu06g0763 481 PANTHER PECTATE LYASE 18-RELATED 18 440 IPR045032 GO:0030570(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu05g2187 Cmu-Chr5:31318746 Cmu06g0763 Cmu-Chr6:9141077 5.80E-155 dispersed
Cmu06g0763 Cmu-Chr6:9141077 Cmu09g1873 Cmu-Chr9:34862403 2.40E-168 dispersed
Cmu05g0385 Cmu-Chr5:3284639 Cmu06g0763 Cmu-Chr6:9141077 5.30E-215 wgd
Cmu06g0763 Cmu-Chr6:9141077 Cmu07g0223 Cmu-Chr7:2223283 3.70E-190 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu06g0763 K01728 - csv:101217580 840.491