Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu06g0778 ATGTGGATTGTTCGTGGGATTTTTGTGGGATTGATTTTGATGATGATAATATTTGTAAGAGGAAATGAAGGTCAATCTTATAAAAGAGTAGGAGTGAAGAAATTGGCATGGAAGACTGTGGTTGTTGACCAGAATGGCCATGGAAATTTCTCTACCATTCAAGCTGCCATTGATTCTGTTCCTTCTAATAATAGGTTTTGGATCTCCATTCATGTTAACCCTGGTGTTTATAGAGAGAAGGTGAAAATCCCATATGATAAACCATATATCATTTTGAAAGGACAAAGAAAAAGAACAACAAAGGTTGTTTGGGACGACCATCTCACTGTTGCTCAGAGCCCTACTTTCACTTCTTCAGCTGATAATATTGTCGTCAAATCCATCACTTTTGTGAATTCTTACAACTATCCATGGAAGAATGGAAATCCAAGAGTTCCAGCAGTAGCAGCAATGATTACAGGCGACAAGTCGTCTTTCTATAGATGTGGTTTCTATGGAGTTCAGGACACATTATGGGATGATCAAGGACGACATTACTATCATCGTTGCACCATTCAAGGAGCTGTCGACTTTATTTTTGGAGCTGCCCAATCCATTTTTCAGGGGTGTTCAATATCAGTGGTTGGAGAAGCACTTCTTCCATTAGGGTCCACAAGCTTCATAACAGCACAGGGAAGAACCAACCCAAATGATGCAAATGGTTTTGTTTTCAAAGAATGCAAGGTGTTTGGGAGTGGCTCAGCCTTCTTAGGAAGGCCATGGAGAGGCTACTCAAGAGTTATCTTTTACAACTCCAACTTCTCCAACATTATAAACCCTTATGGTTGGGATCCTTGGCATTTTGTTGGTCAAGAGAACCAACTTACCTATGTAGAAAATGGGTGTTACGGACCAGGTGCTGACATGTCGCATCGAGTAAAATGGGAAAAGAAGCTCCATTTGAATGAAATACGACGACTCACTAGCATGAGTTTTATCGACACTCAAGGTTGGATCCAAAATCAACCTTGGTAA 1014 40.34 MWIVRGIFVGLILMMIIFVRGNEGQSYKRVGVKKLAWKTVVVDQNGHGNFSTIQAAIDSVPSNNRFWISIHVNPGVYREKVKIPYDKPYIILKGQRKRTTKVVWDDHLTVAQSPTFTSSADNIVVKSITFVNSYNYPWKNGNPRVPAVAAMITGDKSSFYRCGFYGVQDTLWDDQGRHYYHRCTIQGAVDFIFGAAQSIFQGCSISVVGEALLPLGSTSFITAQGRTNPNDANGFVFKECKVFGSGSAFLGRPWRGYSRVIFYNSNFSNIINPYGWDPWHFVGQENQLTYVENGCYGPGADMSHRVKWEKKLHLNEIRRLTSMSFIDTQGWIQNQPW 337
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9528158 9533161 + CmPI595203_06g007780.1 Cmu06g0778 418438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu06g0778 337 ProSitePatterns Pectinesterase signature 2. 185 194 IPR033131 -
Cmu06g0778 337 Gene3D - 35 336 IPR012334 -
Cmu06g0778 337 Pfam Pectinesterase 40 328 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Cmu06g0778 337 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 28 334 - GO:0030599(PANTHER)|GO:0045490(PANTHER)|GO:0052689(PANTHER)
Cmu06g0778 337 SUPERFAMILY Pectin lyase-like 38 334 IPR011050 -
Cmu06g0778 337 FunFam Pectinesterase 34 336 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu05g0732 Cmu-Chr5:6326080 Cmu06g0778 Cmu-Chr6:9528158 9.70E-63 dispersed
Cmu06g0778 Cmu-Chr6:9528158 Cmu10g1926 Cmu-Chr10:24723992 1.50E-84 dispersed
Cmu06g0778 Cmu-Chr6:9528158 Cmu08g1433 Cmu-Chr8:26454346 1.10E-60 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu06g0778 - - - 0.0