Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu06g0782 ATGGGACTTTCTTCGCCTTTCCTTTGGCTTTCTGCTCTGGTGTTTGTGGTGTCTCCTATTATCCTAGTTCTGAGCTTCCTATTTGTTCGTTGGTTGATGATAGAAGAGGAAAGAACAGAGGCAGGCTGGGGTAGTAGGAAGGAGTTGACCATGGCATCGACTTCTTTTGCTGGCGGGAAGCAACTGCCAGCAATTGAAGTGTCTTCAAACTGTGTTCCATACCCACCACCGCAAACAACATATGATGATATCGTAGCCAATCCGAAGATCTTTATGACTTCCTTGGAAAAGCTCCACTCTATCATGGGAACCAAGTTCATGATCCCCATTATTGGTGGGAAAGAACTAGACCTGCATCGGCTTTTTGTGGAGGTTACTTCTCGTGGTGGCATTGAGAAGGTTATAAGAGAGAGAAGATGGAAAGAAGTAACTTCAGTTTTCAATTTTCCTTCTACGGCCACCAATGCATCTTTTGTGCTGAGGAAGTACTATCTTTCATTGCTTCACCATTTTGAACAGATTTACTTCTTTAAAGCTGTGGGATGGACACCACTAATTTCTGATTCTTCTCCATGCCCAAGTGCAGCGACAATTCCTATGCAAGGGATGACCTCTATGTTGCCGCCATCAGATAATCAGGCAGTGTCCCAGCAACCACGGATTACTGAACTTCCAGCAGTTTCTCCGAGTTCGACATCACCGGCAGGAGGGTTTCCAGTGATTGGAGTCATTGACGGAAAATTTGATAGCGGATATCTTGTTACTGTTACTGTTGGAACGGAGAAGCTAAAAGGTGTGCTTTATCAGGCTCCTTCTGAGCAACCTTCTCAGCAGCAAGTTTTGCAGCCTGTTGGTGCTTTTGCCAAAGATGGTGCTACCTCCACCGCACCAAATGCTCATCGCCGTCGTCGTCGGAAGAAATCTGAGATTAAGAGAAGGGATCCTGCTCATCCAAAGCCAAACAGAAGCGGCTACAACTTCTTCTTTGCTGAGCAGCATGCCAGACTCAAACCATTATACCCAGGGAAGGACAGGGAGATAAGCAGAATGATTGGTGACCTTTGGAATAAACTTAAAGAGTCTGAAAGAACAGTTTATCAGGAGAAAGCTATGAAAGATAAAGAAAGATACAGAATCGAGATGGAGGATTACAGAGAGAAGCTGAGGACAGGCCAAATCATCAGTGATGCAGTGCCCTTACAGCAGCGTCTTCCGGAACCAGACCTGAATATGGTCTATGCTGACAAAAATGAAGAAACCGAGGGCGGTGAGTCTCCTCAAACACCAGATAATGACACAAGCTATGTGGAAGGCGACTCCGGAGAGTATAAAACGGAAGAGAAGGAGGAGGAAGAAGAAGAAGATGAGGAGGAGGACTCGGAAGAAGATGCATCTCCACAAGGAATTGGTAATGTGGACGTTAACGTTTTTGTTGAGGAGGAACAGTGTGAGACGAGAACAGCCGAAGAGGATGTTAGAAAAGATAGTAGCATGGTCGGTGACGATAAAGAAGTTTACGCCGGGGATTCGGTAATGGTGGAGGTGGAGGCAAAGACAGAACCCGAACCAACAACAGCCATTAGAGAAGATTAA 1593 45.7 MGLSSPFLWLSALVFVVSPIILVLSFLFVRWLMIEEERTEAGWGSRKELTMASTSFAGGKQLPAIEVSSNCVPYPPPQTTYDDIVANPKIFMTSLEKLHSIMGTKFMIPIIGGKELDLHRLFVEVTSRGGIEKVIRERRWKEVTSVFNFPSTATNASFVLRKYYLSLLHHFEQIYFFKAVGWTPLISDSSPCPSAATIPMQGMTSMLPPSDNQAVSQQPRITELPAVSPSSTSPAGGFPVIGVIDGKFDSGYLVTVTVGTEKLKGVLYQAPSEQPSQQQVLQPVGAFAKDGATSTAPNAHRRRRRKKSEIKRRDPAHPKPNRSGYNFFFAEQHARLKPLYPGKDREISRMIGDLWNKLKESERTVYQEKAMKDKERYRIEMEDYREKLRTGQIISDAVPLQQRLPEPDLNMVYADKNEETEGGESPQTPDNDTSYVEGDSGEYKTEEKEEEEEEDEEEDSEEDASPQGIGNVDVNVFVEEEQCETRTAEEDVRKDSSMVGDDKEVYAGDSVMVEVEAKTEPEPTTAIRED 530
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9571609 9574784 + CmPI595203_06g007820.1 Cmu06g0782 418442

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu06g0782 530 ProSiteProfiles ARID domain profile. 85 176 IPR001606 GO:0003677(InterPro)
Cmu06g0782 530 CDD ARID_HMGB9-like 87 172 IPR045303 GO:0003677(InterPro)
Cmu06g0782 530 SMART hmgende2 317 386 IPR009071 -
Cmu06g0782 530 MobiDBLite consensus disorder prediction 289 325 - -
Cmu06g0782 530 SUPERFAMILY ARID-like 82 188 IPR036431 GO:0003677(InterPro)
Cmu06g0782 530 Gene3D High mobility group box domain 302 397 IPR036910 -
Cmu06g0782 530 SUPERFAMILY HMG-box 311 390 IPR036910 -
Cmu06g0782 530 SMART bright_3 86 177 IPR001606 GO:0003677(InterPro)
Cmu06g0782 530 FunFam High mobility group B protein 15 79 191 - -
Cmu06g0782 530 SMART ARID_2 82 172 - -
Cmu06g0782 530 MobiDBLite consensus disorder prediction 479 502 - -
Cmu06g0782 530 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 318 385 IPR009071 -
Cmu06g0782 530 FunFam High mobility group B protein 15 300 395 - -
Cmu06g0782 530 Pfam ARID/BRIGHT DNA binding domain 88 172 IPR001606 GO:0003677(InterPro)
Cmu06g0782 530 Coils Coil 443 463 - -
Cmu06g0782 530 MobiDBLite consensus disorder prediction 298 312 - -
Cmu06g0782 530 Gene3D - 79 179 IPR036431 GO:0003677(InterPro)
Cmu06g0782 530 MobiDBLite consensus disorder prediction 418 530 - -
Cmu06g0782 530 CDD HMG-box_AtHMGB9-like 318 384 - -
Cmu06g0782 530 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 63 434 - -
Cmu06g0782 530 Coils Coil 367 387 - -
Cmu06g0782 530 MobiDBLite consensus disorder prediction 444 464 - -
Cmu06g0782 530 Pfam HMG (high mobility group) box 318 385 IPR009071 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu06g0782 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu05g1576 Cmu-Chr5:25217628 Cmu06g0782 Cmu-Chr6:9571609 5.10E-74 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmu06g0782 . 64 415 ARID Transcription Factor Family AT1G04880 58.4 9.7e-108 387.5
Cmu10g0856 . 324 594 ARID Transcription Factor Family AT1G20910 61.4 1.5e-91 333.6
Cmu05g1576 . 16 309 ARID Transcription Factor Family AT1G76110 67.8 5.4e-111 397.9
Cmu10g0856 . 303 616 ARID Transcription Factor Family AT1G76510 57.9 1.7e-101 366.7
Cmu07g1412 . 1 781 ARID Transcription Factor Family AT3G43240 58.9 3.4e-267 917.9
Cmu09g0129 . 92 853 ARID Transcription Factor Family AT3G43240 58.0 4.2e-257 884.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004427 1 1 1 3 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 6 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6378 PF01388 ARID 2.20E-17 CL0123 Cmu TR