Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu06g0784 ATGGAGGATCAGTTCCCACTCATTGAAGAACAAAAGCCCATCAATCAAAAGTATTTTTCATCTTCTTCTTTACAAGAAGAATTCGTCTCTGGTTCTTACTTTTGTGGTGATCCAACTCTCTGGGGCTCCATAGTTCAATCCTCAAGGTCTGAAAATGGTGGTTCTAATGGAAATGTTGATCAATCAAAATCCCCATCCTCTTCTTCCTCTTCTTCTCCTCCTAATTCCCCTTCTCCTTCTTCTTCTTCTTCTTCTTCATCTTTTAGATTGTTTTCGAGTGAAAAATCTGAGATTTCTGGTGGGAATTTGATCGACAACATTCATGGAATTGAAAGTAATCTTCACCCAAATGGACAAAGGTTCGTTCCTTTGAATTTCTTGGAGACTTTTCCCAAACAAGAATCTGAGCCTTTTTCACCTTCTCCTCCTCTGTTTCAGTCTCGAATAGATTCAACAAATCTGACTCTGTTTCTTCAAGAACCAGCCATTGTTGATCCATCCCCTCCAAACCCATTTCAAATTCATGCTCAAACAGGGCTCCAATGGCTGAAAAACAGCCAAAATCAGAACCAAGCCGCTGCCATTTTTGCGGCTGCGTCGAGAAATTACAGGGATTTCTTTCTCGGGGCGACGAAGACGCAGCCGATGAAACAGATTGGAAGAAAACAGGGGAATCTCAAAACAGAGTCGTCGGCGACGGCAGTCGGAAAGTTGTTTAGAGGTGTCCGACAGCGGCACTGGGGGAAATGGGTGGCGGAGATTCGGCTGCCGAGAAATCGGACGAGGGTATGGCTTGGGACCTTCGACACAGCCGTCGAAGCCGCCGTCGCCTACGACACTGCCGCCTACATGCTAAGGGGGGAATTTGCACATTTGAATTTTCCCGATCAGAAGCACCGCCTGAAATCCAACTCTCTCAACCGGACCACAGCGGCGCTTCTGGAGGCCAAGTTGCAGGCGATCACACAAGGGAATTCCGGTAAGAAAAAAACGACCGCCGTCACCGCTGCTACCATATCGACCATTGATTCTTCTTCTATTTCCGAGAAGGGATTGTTGGAAGGAGATTCAAAGGTGTTGAATTTGAGCAAGAATCCGGCGAGGTTTTCGTCGGAAAACATGGCGGGGAGTGGCGGCGGAAACGGTGGGGGATCTGAAACAGGGGAATTGAAGAGAAATGTAGAAGGAAATTTGGAAATTGAACAACATTTTCAACTCAGCAGAATGCCATCTTTGGATATGGACATGATTTGGGATGCTTTGTCAGTTTCTGATTCATAA 1281 45.98 MEDQFPLIEEQKPINQKYFSSSSLQEEFVSGSYFCGDPTLWGSIVQSSRSENGGSNGNVDQSKSPSSSSSSSPPNSPSPSSSSSSSSFRLFSSEKSEISGGNLIDNIHGIESNLHPNGQRFVPLNFLETFPKQESEPFSPSPPLFQSRIDSTNLTLFLQEPAIVDPSPPNPFQIHAQTGLQWLKNSQNQNQAAAIFAAASRNYRDFFLGATKTQPMKQIGRKQGNLKTESSATAVGKLFRGVRQRHWGKWVAEIRLPRNRTRVWLGTFDTAVEAAVAYDTAAYMLRGEFAHLNFPDQKHRLKSNSLNRTTAALLEAKLQAITQGNSGKKKTTAVTAATISTIDSSSISEKGLLEGDSKVLNLSKNPARFSSENMAGSGGGNGGGSETGELKRNVEGNLEIEQHFQLSRMPSLDMDMIWDALSVSDS 426
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9616416 9617696 - CmPI595203_06g007840.1 Cmu06g0784 418444

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu06g0784 426 MobiDBLite consensus disorder prediction 45 87 - -
Cmu06g0784 426 Pfam AP2 domain 239 287 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu06g0784 426 ProSiteProfiles AP2/ERF domain profile. 238 295 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu06g0784 426 MobiDBLite consensus disorder prediction 368 390 - -
Cmu06g0784 426 PRINTS Ethylene responsive element binding protein signature 239 250 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu06g0784 426 PRINTS Ethylene responsive element binding protein signature 261 277 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu06g0784 426 FunFam Ethylene-responsive transcription factor 2 237 296 - -
Cmu06g0784 426 Gene3D AP2/ERF domain 238 296 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu06g0784 426 SMART rav1_2 238 301 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu06g0784 426 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 51 421 IPR051758 GO:0005634(PANTHER)|GO:0043565(PANTHER)
Cmu06g0784 426 CDD AP2 237 297 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu06g0784 426 SUPERFAMILY DNA-binding domain 238 296 IPR016177 GO:0003677(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu06g0784 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu06g0784 Cmu-Chr6:9616416 Cmu08g1036 Cmu-Chr8:22680774 1.90E-28 dispersed
Cmu06g0784 Cmu-Chr6:9616416 Cmu11g1539 Cmu-Chr11:27710984 5.00E-29 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g903 . . Bda03g01124 Bda08g00035 . . . Bma05g01291 Cmo08g00995 . . . . . . . . . . . . . . . Cla06g00758 Cam06g0808 Cec06g0821 Cco06g0826 Clacu06g0810 Cmu06g0784 Cre06g1562 . . Cone7ag0394 . . . Chy05g00558 . . . . . Bpe05g01141 . . . Sed04g2065 . . Cma08g01023 . Car08g00900 . . . Bhi12g01500 Tan06g2302 Cmetu05g0661 Lac12g2046 Hepe03g0358 . Lcy13g0462 . . . . . . . Lsi09g01142 . . Cme05g00716
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008409 2 1 0 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6379 PF00847 AP2 1.60E-12 CL0081 Cmu TF