Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu06g0790 GCTGCTTCTTTCTTTTCATTTCTCTGCAAATTCTTGTGGTTCGATTTGGTTAATATCAAATGGTCGACCACCACTGGTCATCTTATCTACAAGCTTGGAGGAATTGACAAGCGTGTGATTGAGAGATTCGAGAAGGAAGCTGCTGAGATGAACAAGAGGTCATTCAAGTATGCTTGGGTGCTCGACAAACTTAAGGCAGAACGTGAACGTGGTATTACCATCGACATTGCTCTGTGGAAGTTTGAGACCACCAAGTACTACTGCACAGTCATTGATGCTCCCGGACATCGTGACTTTATCAAGAACATGATTACTGGAACTTCACAGGCTGACTGTGCTGTCCTCATTATTGACTCCACTACTGGTGGTTTTGAGGCTGGTATTTCCAAGGATGGTCAGACCCGTGAGCACGCTCTTCTTGCTTTCACCCTTGGTGTCAAGCAAATGATCTGCTGCTGCAACAAGATGGATGCTACCACTCCCAAATACTCCAAGGCAAGGTACGACGAAATCGTGAAGGAAGTCTCATCTTACCTCAAGAAGGTCGGATACAACCCAGAAAAAATCCCTTTTGTTCCCATCTCTGGTTTCGAGGGTGACAACATGATTGAGAGGTCCACCAACCTTGACTGGTACAAGGGACCAACCCTCCTTGAGGCTCTTGACTTGATCTCTGAGCCCAAGAGGCCCTCAGACAAGCCCCTCCGTCTCCCACTTCAGGACGTTTACAAGATTGGTGGTATTGGAACTGTCCCTGTTGGACGTGTTGAAACTGGTATCCTCAAGCCTGGTATGGTTGTCACCTTTGGACCAACTGGACTCACCACTGAAGTTAAGTCTGTTGAAATGCACCACGAGTCTCTGCCAGAGGCCTTGCCTGGTGACAATGTCGGCTTCAACGTGAAGAACGTTGCTGTCAAGGATCTCAAGCGTGGTTTCGTTGCCTCAAACTCCAAGGATGACCCTGCCAAGGAGGCTGCCAACTTCACATCCCAGGTTATCATCATGAACCACCCTGGCCAGATTGGTAACGGTTATGCCCCAGTCCTTGATTGCCACACCTCCCACATTGCTGTTAAGTTTGCTGAGATCCTCACCAAGATTGATCGTCGATCTGGTAAGGAACTCGAAAAGGAGCCCAAATTCTTGAAGAACGGTGATGCCGGTATGGTTAAGATGGTTCCGACCAAGCCAATGGTTGTGGAGACATTCTCCTCATACCCACCATTGGGTCGTTTTGCTGTTCGTGATATGCGTCAAACCGTTGCAGTTGGTGTGATCAAGAGTGTGGAGAAGAAGGACCCAACAGGAGCCAAGGTCACCAAATCCGCTGTCAAGAAGAAATAA 1347 48.18 AASFFSFLCKFLWFDLVNIKWSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDLISEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGILKPGMVVTFGPTGLTTEVKSVEMHHESLPEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAKEAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGMVKMVPTKPMVVETFSSYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTGAKVTKSAVKKK 448
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
6 9697876 9700498 - CmPI595203_06g007900.1 Cmu06g0790 418450
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cmu06g0790 448 CDD EF1_alpha 22 228 - -
Cmu06g0790 448 Pfam Elongation factor Tu GTP binding domain 22 222 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Cmu06g0790 448 PRINTS GTP-binding elongation factor signature 89 99 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Cmu06g0790 448 PRINTS GTP-binding elongation factor signature 69 77 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Cmu06g0790 448 PRINTS GTP-binding elongation factor signature 105 116 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Cmu06g0790 448 PRINTS GTP-binding elongation factor signature 149 158 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Cmu06g0790 448 CDD EF1_alpha_II 231 321 - -
Cmu06g0790 448 NCBIfam translation elongation factor EF-1 subunit alpha 19 434 IPR004539 GO:0003746(InterPro)|GO:0005525(InterPro)|GO:0006414(InterPro)
Cmu06g0790 448 FunFam Elongation factor 1-alpha 230 317 - -
Cmu06g0790 448 Gene3D - 17 227 IPR027417 -
Cmu06g0790 448 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 6 231 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Cmu06g0790 448 Pfam GTP-eEF1A C-terminal domain-like 328 428 IPR054696 -
Cmu06g0790 448 Pfam Elongation factor Tu domain 2 249 314 IPR004161 GO:0005525(InterPro)
Cmu06g0790 448 Gene3D Translation factors 324 431 - -
Cmu06g0790 448 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 327 430 IPR009001 -
Cmu06g0790 448 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 22 250 IPR027417 -
Cmu06g0790 448 SUPERFAMILY Translation proteins 232 322 IPR009000 -
Cmu06g0790 448 CDD EF1_alpha_III 324 427 - -
Cmu06g0790 448 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 62 77 IPR031157 -
Cmu06g0790 448 Gene3D Translation factors 230 317 - -
Cmu06g0790 448 PANTHER TRANSLATION FACTOR 19 428 IPR050100 GO:0003746(PANTHER)|GO:0003924(PANTHER)|GO:0006412(PANTHER)|GO:0006414(PANTHER)
Cmu06g0790 448 FunFam Elongation factor 1-alpha 324 431 - -
Cmu06g0790 448 FunFam Elongation factor 1-alpha 13 227 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu06g0790 Cmu-Chr6:9697876 Cmu09g1956 Cmu-Chr9:35637359 6.00E-243 dispersed
Cmu06g0790 Cmu-Chr6:9697876 Cmu02g2090 Cmu-Chr2:34558785 2.90E-245 transposed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu06g0790 K03231 - csv:101215193 847.04