Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu06g0813 ATGGGAGACGTTTCAGGCGCCGCCGCCGCCGCCGGAACCAAGACCACAAAGCTTCCTATTCCAGGAAAGAGGAACATTCTCATCACCAGCGCTCTTCCATATGTCAACAACGTTCCTCACCTTGGCAACATCATTGGCTGTGTGTTGAGTGCTGATGTTTTTGCTCGATACTGTCGTCTTAGAGGTTATAACGCTATTTACATTTGCGGAACCGATGAGTATGGAACGGCGACGGAGACAAAAGCAATGGAAGAGAAATGCTCTCCTAAAGAGATTTGTGACAAGTATCACGCGATTCACAAAGAAGTTTATAATTGGTTTGGTATTAGTTTTGATGAGTTTGGCCGCACATCATCGCCACAGCAGACTGAAGTTTGTCAAGCAATATTTGGCAAACTATTGAAGAACAATTGGCTTTCTGAGAACACGATGCAACAGCTGTACTGTGATACTTGTGAGAGATTTTTAGCCGATCGGCTCGTTGAAGGCATATGTCCTACTCCAGGTTGTGAGTATGACTCCGCACGTGGTGATCAGTGTGAGAAGTGCGGGAAACTTCTAAATCCAACTGAATTGAAAGACCCTAGGTGCAAGGTCTGTCAAACAACCCCACGTATCCGTGACACAAACCACATGTTTCTTGAACTTCCTTTGCTGAGAGAGAAACTGGAAGAATATATCAACAAGATGTCTGTGGCTGGATCTTGGAGCCAAAATGCTATTCAAGCAACACATGCTTGGCTTAAGGAAGGGTTGAAACCCCGGTGTATTACAAGAGATCTAAAGTGGGGGGTTCCCGTTCCACTTGAAAGGTTCAAGGACAAGGTCTTCTATGTCTGGTTTGATGCACCTATAGGATATGTCTCCATTACATCATGCTACACAAATGAATGGGAGAAATGGTGGAAGAATCCAGAAAATGTGGAGCTTTTTCAATTTATGGGAAAGGATAATGTGCCTTTCCACACGGTTATGTTTCCTTCTACTCTTCTTGGAACTGGAGAAGACTGGACCTTGATGAAAACCATTAGTGTTACTGAATATTTAAACTATGAAGCAGGAAAATTTTCTAAAAGTAAGGGCATAGGAGTTTTTGGTAATGATGCAAAAGATACAAATATTCCTGTAGAAGTATGGAGATATTACTTATTAGCCAATAGGCCTGAGGTTTCAGATACATTATTTACATGGGCTGATTTACAAGCAAAACTTAATGGCGAGTTGCTGAACAATTTGGGCAACTTCATTCATCGAGTTTTGAGCTTCATTGCTAAACCTTTAGGGCAGGGTTATGGTTCCATTATTCCCGATGCTCTTGACGTGGACTCTCATGAATTAACATTGGGCTTGGCTGAAAAAGTTGGTAAATACGTAGACCAATATATGGAATCAATGGAGAAGGTTAAATTAAAACAAGGTCTGAAAGCTGCAATGGCTATTTCAAGTGAGGGAAATATATATTTGCAAACAGCACAGTTCTGGAATCTTTACAAGGCGGACAAACCTTCCTGCAATATTGTTATGAGAACTTCAGCTGGACTAGTACATCTTCTAGCATGTTTATTAGAACCTTTCATTCCTTCTTTCTCACTGGAGGTGTTTAGGCAGTTGGATTTACCTCCGGAACGACATATTTCGCTTTGTGAAGAAAAAGGAGACATTGAGAGAGCAAAACAACCTTGGAAGATCCTACCTTCTGGTCATAAGATTGGCACACCAGAGCCACTATTCAAAGAATTGAAAGACGAAGAAGTAGAACTGTACAGAGACAAGTTTGCTGGAAGTCAGGCTCAACGCATTGTGAGAGCAGAAGCTGAAGCAGAAAAGATTGCTGCTCAGCTAAAAAAAACTAACGTCTCAGGCAATGGAAAAAAGCAACAGGCAAAATCCACAGGCAGCAAACCGAAAACTGCTGTGGAGCCAGAAATTACTATTACAAGACTGGATATCCGTGTTGGGTTAATTACAAAAGCTCAGAAGCATCCTGATGCTGATTCCCTATATGTCGAGGAAATCGATGTGGGAGAATCGCAACCTCGAAATGTTGTCAGTGGATTAGTCAAGTACATACCTCTTGAAGAGATGCAGAACCGGAAGGTGTGTGTTCTTTGCAACTTGAAGCCGGCAGCCATGAGGGGCATTAAATCTCAAGCCATGGTTCTTGCTGCTTCCAATAGCGATCATACCAAGGTGGAATTAGTTGAGCCACCCAAAGACGCCAATGTTGGAGAAAGAATTAAATTCCCAGGATTCGAAGGCGAGCCCGACGATGTATTGAACCCGAAGAAGAAGGTATGGGAGACACTGCAGGTAGATTTGGCTACTAACACAGACCTGGTGGCATGTTTTAAAGATATACCATTTACCACATCAGCTGGTGTTTGCAAAGTTTCTTCCATTTCTAGTGGTTCTATCAGGTTACTAGAAAATATTTCGGTCCGATTAGATCAGCTATCCGAAGATCAGGAACGAACAGCAGCAAGAACGTCAGAGACATCGACAAGAAGTTGGAATGGAACAAGCTTTTGGGTTTCAAGAAAAGACTTCACAACATTCAGCAACCCCAAATCCTTTCAAGAAACCTTGGAGAACCACAGTTTAATATTCAAGAACCACCAAGATTTAAAAAAGCATATCAACGGTGGCGACAATAGGAGATGGAGTTGTCCAGTGAAGAAGAGGAAGAAGATCTAG 2694 42.28 MGDVSGAAAAAGTKTTKLPIPGKRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNAIYICGTDEYGTATETKAMEEKCSPKEICDKYHAIHKEVYNWFGISFDEFGRTSSPQQTEVCQAIFGKLLKNNWLSENTMQQLYCDTCERFLADRLVEGICPTPGCEYDSARGDQCEKCGKLLNPTELKDPRCKVCQTTPRIRDTNHMFLELPLLREKLEEYINKMSVAGSWSQNAIQATHAWLKEGLKPRCITRDLKWGVPVPLERFKDKVFYVWFDAPIGYVSITSCYTNEWEKWWKNPENVELFQFMGKDNVPFHTVMFPSTLLGTGEDWTLMKTISVTEYLNYEAGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLANRPEVSDTLFTWADLQAKLNGELLNNLGNFIHRVLSFIAKPLGQGYGSIIPDALDVDSHELTLGLAEKVGKYVDQYMESMEKVKLKQGLKAAMAISSEGNIYLQTAQFWNLYKADKPSCNIVMRTSAGLVHLLACLLEPFIPSFSLEVFRQLDLPPERHISLCEEKGDIERAKQPWKILPSGHKIGTPEPLFKELKDEEVELYRDKFAGSQAQRIVRAEAEAEKIAAQLKKTNVSGNGKKQQAKSTGSKPKTAVEPEITITRLDIRVGLITKAQKHPDADSLYVEEIDVGESQPRNVVSGLVKYIPLEEMQNRKVCVLCNLKPAAMRGIKSQAMVLAASNSDHTKVELVEPPKDANVGERIKFPGFEGEPDDVLNPKKKVWETLQVDLATNTDLVACFKDIPFTTSAGVCKVSSISSGSIRLLENISVRLDQLSEDQERTAARTSETSTRSWNGTSFWVSRKDFTTFSNPKSFQETLENHSLIFKNHQDLKKHINGGDNRRWSCPVKKRKKI 897
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 10274839 10290451 + CmPI595203_06g008130.1 Cmu06g0813 418473

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu06g0813 897 SUPERFAMILY Methionyl-tRNA synthetase (MetRS), Zn-domain 161 197 IPR029038 -
Cmu06g0813 897 Pfam Putative tRNA binding domain 650 745 IPR002547 GO:0000049(InterPro)
Cmu06g0813 897 Gene3D HUPs 25 408 IPR014729 -
Cmu06g0813 897 MobiDBLite consensus disorder prediction 616 638 - -
Cmu06g0813 897 FunFam tyrosine--tRNA ligase, cytoplasmic isoform X2 643 806 - -
Cmu06g0813 897 ProSitePatterns Aminoacyl-transfer RNA synthetases class-I signature. 33 44 IPR001412 GO:0000166(InterPro)|GO:0004812(InterPro)|GO:0005524(InterPro)|GO:0006418(InterPro)
Cmu06g0813 897 Gene3D - 643 813 IPR012340 -
Cmu06g0813 897 ProSiteProfiles tRNA-binding domain profile. 644 747 IPR002547 GO:0000049(InterPro)
Cmu06g0813 897 CDD tRNA_bind_EMAP-II_like 643 746 - -
Cmu06g0813 897 MobiDBLite consensus disorder prediction 616 634 - -
Cmu06g0813 897 Gene3D - 409 579 - -
Cmu06g0813 897 SUPERFAMILY Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 412 592 IPR009080 GO:0000166(InterPro)|GO:0004812(InterPro)|GO:0005524(InterPro)|GO:0006418(InterPro)
Cmu06g0813 897 Pfam Anticodon binding domain of methionyl tRNA ligase 449 596 IPR041872 -
Cmu06g0813 897 Gene3D - 161 197 IPR029038 -
Cmu06g0813 897 NCBIfam methionine--tRNA ligase 26 561 IPR014758 GO:0000166(InterPro)|GO:0004825(InterPro)|GO:0005524(InterPro)|GO:0006431(InterPro)
Cmu06g0813 897 FunFam Methionine--tRNA ligase 161 197 - -
Cmu06g0813 897 Coils Coil 600 620 - -
Cmu06g0813 897 FunFam Methionine--tRNA ligase cytoplasmic 409 579 - -
Cmu06g0813 897 PRINTS Methionyl-tRNA synthetase signature 312 327 IPR033911 GO:0004825(InterPro)|GO:0006431(InterPro)
Cmu06g0813 897 PRINTS Methionyl-tRNA synthetase signature 277 288 IPR033911 GO:0004825(InterPro)|GO:0006431(InterPro)
Cmu06g0813 897 PRINTS Methionyl-tRNA synthetase signature 61 75 IPR033911 GO:0004825(InterPro)|GO:0006431(InterPro)
Cmu06g0813 897 PRINTS Methionyl-tRNA synthetase signature 109 120 IPR033911 GO:0004825(InterPro)|GO:0006431(InterPro)
Cmu06g0813 897 PRINTS Methionyl-tRNA synthetase signature 28 41 IPR033911 GO:0004825(InterPro)|GO:0006431(InterPro)
Cmu06g0813 897 PRINTS Methionyl-tRNA synthetase signature 407 418 IPR033911 GO:0004825(InterPro)|GO:0006431(InterPro)
Cmu06g0813 897 CDD MetRS_core 25 395 IPR033911 GO:0004825(InterPro)|GO:0006431(InterPro)
Cmu06g0813 897 CDD Anticodon_Ia_Met 404 537 IPR041872 -
Cmu06g0813 897 Pfam tRNA synthetases class I (M) 26 420 IPR015413 GO:0000166(InterPro)|GO:0004812(InterPro)|GO:0005524(InterPro)|GO:0006418(InterPro)
Cmu06g0813 897 Hamap Methionine--tRNA ligase [metG]. 24 591 IPR023458 GO:0004825(InterPro)
Cmu06g0813 897 PANTHER METHIONINE--TRNA LIGASE 14 745 IPR023458 GO:0004825(InterPro)|GO:0004825(PANTHER)|GO:0005829(PANTHER)|GO:0006431(PANTHER)|GO:0017101(PANTHER)
Cmu06g0813 897 SUPERFAMILY Nucleotidylyl transferase 23 405 - -
Cmu06g0813 897 SUPERFAMILY Nucleic acid-binding proteins 645 804 IPR012340 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu06g0813 K01874 - - csv:101208697 1541.94
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu04g0364 Cmu-Chr4:11483152 Cmu06g0813 Cmu-Chr6:10274839 9.50E-37 dispersed
Cmu06g0813 Cmu-Chr6:10274839 Cmu07g0569 Cmu-Chr7:7004408 4.10E-41 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g991 . Blo12g00110 Bda03g01132 . Bpe04g01075 . Bma04g01170 . . Cmo17g00087 . . . . . . . . . . . . . . Cla06g00784 Cam06g0838 Cec06g0853 Cco06g0867 Clacu06g0841 Cmu06g0813 Cre06g1593 . . . . . Csa02g00898 . . . . . . . . . . . . . . Cma17g00080 . Car17g00074 Cpe12g00074 . Bhi12g01467 . . . . . . . . . . . . . Lsi09g01114 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003190 3 1 3 3 3 1 2 1 1 1 1 1 2 2 1 2 1 2 2 1 1 1 1 1 1 1 2 2 1 3 48