Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu06g0842 ATGAGGACTGAAAACCGAAAGAGGAAGCTGCGGCTAAGCAAGATCTATTCATTTGCTTGTGGAAAAACATCATTGAGAGATGAAGATCATTCACAAATTGGGAGGCCCGGGTTCTCCCGGGTGGTTTTCTGTAATGATCCTGATTGTTTGGAGGCTGGAATGCGTAATTATGTTAATAATTCCATCAGGTCTACAAAGTATACACCCATCAATTTTTTGCCCAAGTCCTTGTTTGAGCAGTTTAGGAGGGTGGCTAATTTTTACTTCTTGATTGCTGGAATACTAGCCTTCACTCCTCTTGCTCCTTTTACTGCCGTCAGTGCAATTATCCCTCTTATTGCAGTCATTATCGCGACAATGGTTAAAGAAGGTATTGAAGATTGGCGACGACAAGCACAGGATATTGAGGTGAATAATAGAAAGGTTAAGGTTCATCAAGGCAATGGAGTCTTTGACCTTACTGAATGGAAAACTTTGAGGGTCGGAGATATAGTGAAGGTTGAAAAGGATCAATACTTTCCAGCCGACCTTCTTTTAATTTCATCATGCTATGAGGATGGAATCTGTTACGTAGAAACGATGAACCTTGATGGGGAAACAAATCTGAAGGTAAAGCAAGCATTGGATGCAACTGCATTTGCAAATGAGGATTCTAACTTCCGTGATTTTAAGGCTACAATCAAATGTGAAGACCCAAATGCAAATCTTTATACCTTTGTTGGAAGCATGGACTTTGAAGAGCAACAATATCCACTTTCTCCTCAAAATCTTCTCCTGAGGGACTCCAAACTCCGAAACACCGAATATATATACGGGGTTGTTGTCTTTACTGGTCAAGATTCAAAGGTTATTCAAAATTCTACTGATCCACCTTCCAAGAGAAGCAAAGTTGAGAAGAAGATGGATAAAATCATATATCTGCTGTTAAGCATTCTATTCGTGCTGGCATTTATTGGTTCTATAGTCTTTGGTGTCGTGACTAAAGATGATCTGAAAAATGGGAGGACAAAGAGATGGTATCTTAGACCAGATGATTCTACTATTTTCTTTGATCCCAATAATGCACCAGCTGCTGCAATTTTTCACTTTCTGACTGCACTGATGTTGTATAACTACTTTATCCCTATATCCTTGTATGTGTCTATTGAAATTGTCAAAGTTCTTCAGAGTATCTTCATCAATCAAGACATTCATATGTACTATGAAGAAGCTGACAAACCAGCACATGCCCGCACCTCCAATTTGAATGAGGAACTTGGTCAAGTTGACACTATACTCTCTGACAAGACTGGCACTTTGACCTGTAACTCAATGGAGTTTATCAAGTGTTCTGTGGCTGGGACAGCTTATGGCAGTGGTGTCACTGAAACTGAGAGAGCTATGGAAGGCAGAAATAGTATGCCAATGCTTAATGGCAATGGCATTGGAAATATCCATAAGAGCAATGCGGATGCTTCAGATACAAATCCCTCTGTCAAAGGCTTTAATTTTAAGGACAAAAGGATTATGAACGGAAACTGGGTTAATGAACCTCATGCAGATGTCATCCAGAAGTTCTTCCGCCTCCTTGCAACTTGTCATACAGCTATTCCTGATGTGGATGAAAACACGGGAAAGGTTTCATATGAAGCTGAATCGCCAGATGAAGCAGCATTTGTAATTGCTGCCAGAGAAATTGGTTTTGAATTCTACCAGAGGACACAGACAAGTGTATCTATTCGTGAATTGGATCCTAGGTCTGGAAGGAAGGTCAAAAGGTCATATAAGCTTTTAAATGTTTTGGAGTTTAATAGCGCCCGAAAGAGGATGTCTGTCATAATTAGAGATGAAGAAGGGAAAGTGCTATTACTATGCAAAGGTGCTGACAGCGTCATGTTTGAGAGGCTTGCGAAGAATGCTAGAGAATTTGAAGAGAAAACGAAGGAGCATATCAATGAATATGCCGATGCAGGCCTACGGACCTTGTTACTTGCTTATCGTGAACTTGATGAGGAGGAATACAAGGAATTTGATAGGAAATTCTATGAAGCAAAGAATTCAGTTAGTGCAGAGAGGGAGGCAATGATTGATAAAGTAACAGACCACATTGAGAGGAACTTAATTCTTCTTGGTTCCACAGCAGTTGAGGACAAGCTTCAAAATGGGGTCCCTGAATGCATAGATAAACTTGCTCAAGCTGGGATTAAGATCTGGGTTTTGACTGGGGACAAGATGGAGACTGCGATCAATATTGGTTTTGCCTGTAGTTTGCTGAGACAAGGAATGAAACAGATCATTATATCTCTGGAGACACCCGAAATTCAAGCCTTAGAAAGGACGGGAGAGAAGGATATGATCACTAAGGCATCAAAAGAAAGTATCGTCCACAAGATAAATCGGGCAAGATCTCAGATCACTGCATCAAGTGGAAGCTCTGAGGCTTCTGCATTGATAATTGATGGGAAATCACTTACTTATGCTCTAGAGGATGATGTGAAGGATGCATTCCTTGACCTTGCAATTGGATGTGCGTCTGTTATTTGTTGTCGCTCATCTCCAAAGCAAAAGGCAATGGTCACTAAGTTGGTTAAACTTGCAACGGGGAAAACAACATTAGCAATTGGTGATGGTGCAAATGATGTTGGAATGCTTCAAGAAGCAGATATTGGAGTTGGAATCAGTGGTGCCGAAGGGATGCAGGCAGTCATGTCGAGTGATATTGCAATTGCTCAGTTCAGATATTTGGAGCGTCTTCTGCTTGTGCATGGACATTGGTGTTACAGGAGATTATCATCAATGATTTGCTACTTTTTCTACAAGAATTTCACATTTGGTTTTACACTTTTCTTATATGAGGCATACACTTCGTTCTCTGGACAACCTGCATATAACGACTGGTTTATGTCACTCTACAACGTTGTGTTCTCGTCTCTGCCAGTTGTGGCCCTCGGGGTGTTTGACCAAGACGTGTCTGCAAGATACTGCCTTAAGTTTCCTATGTTGTACCAACAAGGTGTGCAGAACGTCCTCTTCAGCTGGGTTAGGATACTTGGCTGGATGTTTAATGGTCTTTGTAGTGCAGTGATCATTTTCTTTTTCTGCACAAGTGGAATGCAGCATCAAGCATTTAATTCCGAGGGGAAAACCGTGGGGAGGGATATTCTAGGAGCGACGATGCTGTCATGTGTTGTTTGGGTTGTCAACTTGCAGATGGCTCTCTCTGTTAGCTACTTCACTTTGGTACAGCATATTTTCATCTGGGCTTCGATCTTTATTTGGTACCTTTTTCTGATGATATATGGAGCCTTTCCTGCCAGCATTTCGACAACTGCATATCGCGTGTTCCTCGAAGCCCTTGCTCCTGCCGGGTCTTATTGGCTTCTGCTGATATTTGTGGTGATCTCTACTCTCATTCCATTCTTTGTATACTCAGCATTACAGTTGAATTTCTTTCCCATGTACCATGAAAAAATACAGTGGATAAGACACGATGGTCAGGGGAAGATAGATGATCCCGAGTTTGTCAATATGGTCAGGCAAAGCTCATTGAGACCAACAACTGTGGGCTTCACTGCTCGTTTGGCAGCCAAAATAAGAAGAGAAAAATCATAG 3591 41.38 MRTENRKRKLRLSKIYSFACGKTSLRDEDHSQIGRPGFSRVVFCNDPDCLEAGMRNYVNNSIRSTKYTPINFLPKSLFEQFRRVANFYFLIAGILAFTPLAPFTAVSAIIPLIAVIIATMVKEGIEDWRRQAQDIEVNNRKVKVHQGNGVFDLTEWKTLRVGDIVKVEKDQYFPADLLLISSCYEDGICYVETMNLDGETNLKVKQALDATAFANEDSNFRDFKATIKCEDPNANLYTFVGSMDFEEQQYPLSPQNLLLRDSKLRNTEYIYGVVVFTGQDSKVIQNSTDPPSKRSKVEKKMDKIIYLLLSILFVLAFIGSIVFGVVTKDDLKNGRTKRWYLRPDDSTIFFDPNNAPAAAIFHFLTALMLYNYFIPISLYVSIEIVKVLQSIFINQDIHMYYEEADKPAHARTSNLNEELGQVDTILSDKTGTLTCNSMEFIKCSVAGTAYGSGVTETERAMEGRNSMPMLNGNGIGNIHKSNADASDTNPSVKGFNFKDKRIMNGNWVNEPHADVIQKFFRLLATCHTAIPDVDENTGKVSYEAESPDEAAFVIAAREIGFEFYQRTQTSVSIRELDPRSGRKVKRSYKLLNVLEFNSARKRMSVIIRDEEGKVLLLCKGADSVMFERLAKNAREFEEKTKEHINEYADAGLRTLLLAYRELDEEEYKEFDRKFYEAKNSVSAEREAMIDKVTDHIERNLILLGSTAVEDKLQNGVPECIDKLAQAGIKIWVLTGDKMETAINIGFACSLLRQGMKQIIISLETPEIQALERTGEKDMITKASKESIVHKINRARSQITASSGSSEASALIIDGKSLTYALEDDVKDAFLDLAIGCASVICCRSSPKQKAMVTKLVKLATGKTTLAIGDGANDVGMLQEADIGVGISGAEGMQAVMSSDIAIAQFRYLERLLLVHGHWCYRRLSSMICYFFYKNFTFGFTLFLYEAYTSFSGQPAYNDWFMSLYNVVFSSLPVVALGVFDQDVSARYCLKFPMLYQQGVQNVLFSWVRILGWMFNGLCSAVIIFFFCTSGMQHQAFNSEGKTVGRDILGATMLSCVVWVVNLQMALSVSYFTLVQHIFIWASIFIWYLFLMIYGAFPASISTTAYRVFLEALAPAGSYWLLLIFVVISTLIPFFVYSALQLNFFPMYHEKIQWIRHDGQGKIDDPEFVNMVRQSSLRPTTVGFTARLAAKIRREKS 1196
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 10853925 10860848 - CmPI595203_06g008420.1 Cmu06g0842 418502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu06g0842 1196 Gene3D - 114 288 - -
Cmu06g0842 1196 PRINTS P-type cation-transporting ATPase superfamily signature 867 886 - -
Cmu06g0842 1196 PRINTS P-type cation-transporting ATPase superfamily signature 426 440 - -
Cmu06g0842 1196 Pfam Cation transport ATPase (P-type) 525 629 - -
Cmu06g0842 1196 ProSitePatterns E1-E2 ATPases phosphorylation site. 428 434 IPR018303 -
Cmu06g0842 1196 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 28 1152 - GO:0005886(PANTHER)|GO:0045332(PANTHER)|GO:0140326(PANTHER)
Cmu06g0842 1196 SUPERFAMILY Calcium ATPase, transmembrane domain M 56 1144 IPR023298 -
Cmu06g0842 1196 SFLD p-type atpase 408 918 IPR044492 -
Cmu06g0842 1196 SFLD Haloacid Dehalogenase 408 918 - -
Cmu06g0842 1196 FunFam Phospholipid-transporting ATPase 545 703 - -
Cmu06g0842 1196 Pfam Phospholipid-translocating P-type ATPase C-terminal 895 1145 IPR032630 -
Cmu06g0842 1196 Pfam Phospholipid-translocating ATPase N-terminal 42 109 IPR032631 -
Cmu06g0842 1196 SUPERFAMILY Calcium ATPase, transduction domain A 141 285 IPR008250 -
Cmu06g0842 1196 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 433 674 IPR023299 GO:0000166(InterPro)
Cmu06g0842 1196 FunFam Phospholipid-transporting ATPase 118 288 - -
Cmu06g0842 1196 Coils Coil 626 646 - -
Cmu06g0842 1196 Gene3D - 699 907 IPR023214 -
Cmu06g0842 1196 NCBIfam phospholipid-translocating P-type ATPase 57 1152 IPR006539 GO:0000287(InterPro)|GO:0005524(InterPro)|GO:0015914(InterPro)|GO:0016020(InterPro)|GO:0140326(InterPro)
Cmu06g0842 1196 FunFam Phospholipid-transporting ATPase 703 907 - -
Cmu06g0842 1196 NCBIfam HAD-IC family P-type ATPase 833 949 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Cmu06g0842 1196 CDD P-type_ATPase_APLT_Dnf-like 59 1027 - -
Cmu06g0842 1196 SUPERFAMILY HAD-like 421 922 IPR036412 -
Cmu06g0842 1196 Gene3D - 552 677 IPR023299 GO:0000166(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu04g1180 Cmu-Chr4:26358855 Cmu06g0842 Cmu-Chr6:10853925 0.00E+00 dispersed
Cmu05g2538 Cmu-Chr5:34158960 Cmu06g0842 Cmu-Chr6:10853925 3.70E-275 dispersed
Cmu06g0842 Cmu-Chr6:10853925 Cmu09g0074 Cmu-Chr9:926484 0.00E+00 dispersed
Cmu06g0842 Cmu-Chr6:10853925 Cmu05g2377 Cmu-Chr5:32996256 0.00E+00 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu06g0842 K01530 - csv:101205800 2287.3