Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu06g0888 ATGTCGTCTCCGGCTCCGACCTCGCCGCCGGCCACTAACACGACCTCACCCCCACCTCCCACCACCACCGCACCACCCCCAGCACCTCCGTCTCTCTCACCACCGCCGCCTCCCGACGCTTCCTCTCAGCCTCCACCTGCTTCATCTCCGCCGCCTTCCACCACTCCTTCGCCGCCCCCTCCGGACACTACCACTCCATCTACGCCTACTTCTTCTCCTTCACCGCCAACCACGCCTTCGAGCTCTTCGCCGCCGCCGCCTCCTCCTCCTCCGTCTACCAACTCGACTGCTCCCCCGCAGCTGCCGAGTCCGACGCCGCCCTCGGCTTCTGGCACACCTGCGAGTCCCGGAGCAAATCTGTCTCCGCCGTCTTCCTCACCATCGTCCGGTAATTCTGCCGGACTTGTAGCTGGAGTTGCTGTTGCTGGAGTTGTGGTAGTGGTTGTGGCGTTGATTGTTATGTTTTTGTGTTTAAGAAGGAAGAGAAGACGCGACGAGGAGGCTTACTACCGGCCCCCCCCGCCCGCGGCGTTTAAAGATGGCCCATATGGTCCACAACAGCACCACTGGCAATCACATCCCCCGCCGCCGCCGCCGTCAGATCATTTCGTGGGGTCAGGGCTGAAGCCGTCTCCTCCGCCAGCATCACGGCCACCGCTCTCACCTCCGATTATAAACAGCAGTGGAGGCTCTGGATCTCATTATTCAGGGTCTGAAAATTCGCTTGCTCCTGCTCCATCTTCAATTCCCTTGGGCTTCTCACAAAGCAGCTTCACTTATGAAGAGTTAGCAATGGCGACAGATGGGTTTTCAGAAGCCAACCTCCTCGGACAAGGTGGGTTTGGTTATGTTCATAAAGGAGTACTTCCAAATGGAAAGGAAGTGGCAGTGAAGCAACTTAAAGCTGGAAGTGGACAGGGAGAGCGTGAATTTCAAGCAGAAGTGGAAATAATCAGCCGAGTTCATCATAGACATCTTGTTTCCTTAGTGGGATATTGCATTACTGGCTCCAAAAGATTGCTGGTTTATGAATTTGTTCCCAACAACACATTGGAGTTCCACTTGCATGGCAAAGGACGACCCACCATGGACTGGCCAACGAGACTGAAAATTGCTTTGGGATCTGCCAAGGGATTAGCCTACCTTCATGAGGACTGTAATCCTAAGATTATTCATCGTGACATCAAAGCAGCAAATATACTTTTGGATCTCAAATTCGAAGCAAAGGTTGCAGATTTTGGGCTTGCTAAGTTGTCTTCTGATGTTAATACTCATGTTTCAACCCGAGTCATGGGAACTTTTGGATACCTTGCTCCTGAATATGCTTCAAGTGGGAAACTCACTGAGAAATCAGATGTCTTCTCCTTTGGAGTGATGCTTTTGGAGATGATTACTGGACGCAGACCTGTAGATACAACTCAATCATTCATGGACGATGGATTGCTTGATTGGGCAAGGCCATTACTGTTACGGGCCACCGAAGATGGGGTGTATGACGGTCTAGTAGATCCAAAGCTGAGAGATAACTATGACCACAACGAGATGGCTCGCATGGTTGCTTGCGCGGCTGCCTGTGTGCGCCATTCAGCTAGGCGCCGACCACGGATGAGTCAAGTGGTTCATGCTCTTGAAGGTGAAGCCTCACTTTCTGATCTTAATGAAGGGATTCGCCCTGGACATAGCTCTGTCTACAGTTCTTATGGAAGCTCTGACTACGACACAGCTCAGTACAATGAGGACCTGAAAAAGTTCAGGAAGATGGCGTTGGCGAGTCAGGAGTACGGCAGTGAGTACAGCGAGCCAACGAGTGAGTATGGTTTGTATCCATCTGGGTCGAGTGGCGATGGCCAAACAACCAGGGAAATGGAGGTGAGAACGATGAAGAAAGAAAGTGGAGGTTTTAATGGAAGCTCATAA 1917 52.11 MSSPAPTSPPATNTTSPPPPTTTAPPPAPPSLSPPPPPDASSQPPPASSPPPSTTPSPPPPDTTTPSTPTSSPSPPTTPSSSSPPPPPPPPSTNSTAPPQLPSPTPPSASGTPASPGANLSPPSSSPSSGNSAGLVAGVAVAGVVVVVVALIVMFLCLRRKRRRDEEAYYRPPPPAAFKDGPYGPQQHHWQSHPPPPPPSDHFVGSGLKPSPPPASRPPLSPPIINSSGGSGSHYSGSENSLAPAPSSIPLGFSQSSFTYEELAMATDGFSEANLLGQGGFGYVHKGVLPNGKEVAVKQLKAGSGQGEREFQAEVEIISRVHHRHLVSLVGYCITGSKRLLVYEFVPNNTLEFHLHGKGRPTMDWPTRLKIALGSAKGLAYLHEDCNPKIIHRDIKAANILLDLKFEAKVADFGLAKLSSDVNTHVSTRVMGTFGYLAPEYASSGKLTEKSDVFSFGVMLLEMITGRRPVDTTQSFMDDGLLDWARPLLLRATEDGVYDGLVDPKLRDNYDHNEMARMVACAAACVRHSARRRPRMSQVVHALEGEASLSDLNEGIRPGHSSVYSSYGSSDYDTAQYNEDLKKFRKMALASQEYGSEYSEPTSEYGLYPSGSSGDGQTTREMEVRTMKKESGGFNGSS 638
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 12121910 12124483 + CmPI595203_06g008880.1 Cmu06g0888 418548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu06g0888 638 MobiDBLite consensus disorder prediction 1 132 - -
Cmu06g0888 638 MobiDBLite consensus disorder prediction 189 203 - -
Cmu06g0888 638 Pfam Protein tyrosine and serine/threonine kinase 274 543 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu06g0888 638 PRINTS Proline rich extensin signature 40 61 - -
Cmu06g0888 638 PRINTS Proline rich extensin signature 27 39 - -
Cmu06g0888 638 PRINTS Proline rich extensin signature 3 19 - -
Cmu06g0888 638 FunFam proline-rich receptor-like protein kinase PERK1 248 345 - -
Cmu06g0888 638 MobiDBLite consensus disorder prediction 1 111 - -
Cmu06g0888 638 MobiDBLite consensus disorder prediction 112 132 - -
Cmu06g0888 638 FunFam Proline-rich receptor-like protein kinase PERK1 346 554 - -
Cmu06g0888 638 SMART serkin_6 270 519 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu06g0888 638 MobiDBLite consensus disorder prediction 595 620 - -
Cmu06g0888 638 Gene3D Transferase(Phosphotransferase) domain 1 346 555 - -
Cmu06g0888 638 SUPERFAMILY Protein kinase-like (PK-like) 245 543 IPR011009 -
Cmu06g0888 638 MobiDBLite consensus disorder prediction 166 242 - -
Cmu06g0888 638 Gene3D Phosphorylase Kinase; domain 1 245 345 - -
Cmu06g0888 638 MobiDBLite consensus disorder prediction 595 638 - -
Cmu06g0888 638 MobiDBLite consensus disorder prediction 222 242 - -
Cmu06g0888 638 ProSitePatterns Serine/Threonine protein kinases active-site signature. 390 402 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu06g0888 638 ProSiteProfiles Protein kinase domain profile. 270 549 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu06g0888 638 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 95 587 IPR047117 -
Cmu06g0888 638 ProSitePatterns Protein kinases ATP-binding region signature. 276 298 IPR017441 GO:0005524(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu06g0888 Cmu-Chr6:12121910 Cmu11g0452 Cmu-Chr11:4976478 2.90E-158 dispersed
Cmu11g0233 Cmu-Chr11:2800321 Cmu06g0888 Cmu-Chr6:12121910 3.10E-198 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75607 PF07714 PK_Tyr_Ser-Thr 1.80E-46 CL0016 Cmu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu06g0888 - - - 0.0