Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmu06g0905 | ATGACCGTCCGTTCGACATCCCTAGGCGTCGTCTCTTTTAGTTTTCCTTCTCGTCGGCTATCTTCGAGCATCAAAGTGCTTGTGATTTCAGTAGGGAATCGAGAGATGGATAATTTACCCCCGCTAAATGCTCAAACTGATAGTGGGGAACCGGGTAATGTTGTTTCATCTGATGTTCCTGCTAAAAGACTAGCTAGGCAGCTGGATTTTACGGGATTTGGTGGTGCAGTCTTGCCGGAGCATCCTCATTTTCAGTCTCAGCCTCCGTGTCAACAATCAGAGTCACCGGCCGTCATGGTGGTGCAGAGTCAGTCGCAGCCACAGTCCCCACAACATTTGACGGTTTTGCCCATTGTAACAAAAGCGTCTCATCCTTCGAGAAAGCCAGATTCTCCAAAGTCAAGATCAAGGTCTAGTGTTGAAACAAAAGATGCTACTCCAAAGAAACAAAAACAGTGCAACTGCAAACACTCACGCTGCTTAAAGCTGTACTGCGAGTGCTTTGCATCTGGAATATACTGTGATGGTTGCAATTGCACAAATTGCCATAACAATGTTGAGAATGAAGCTTCTAGGAGAGAAGCAGTCGAAACTACTTTAGAACGTAATCCAAATGCATTCCGACCAAAAATTGCTAGCAGCCCACATGGAACACTAGAGAGCAGGGATGAGATTGGAGAAGTAGTAATGCTGGGAAAGCACAACAAAGGATGCCATTGCAAGAAATCAGGTTGCTTAAAGAAGTATTGTGAGTGCTTTCAGGCCAATATTCTCTGCTCTGAAAACTGCAAGTGCATGGACTGTAAGAATTTTGAAGGCAGTGAAGAGAGACAGGCTCTTTTCCATGGTGACCATGCCAACAACTTGGCTTATATTCAACAGGCAGCAAATGCTGCAATAACTGGAGCTATTGGATCCTCTGGTTATGCTTGCCTTCCCACTTCAAAGAAAAGAAAAGGTCCAGAGCTATGCTTTGGCCCTGTAGGGAAGGATTCCCCCCTCAACAGCATACCACAATTTCATCAGGCAAATAATGTAATGTCTTCAGGCACGTCTACTTCATCTCCCTTCCCAGTTGCTCATGTTGGAAATGGCAGCCCTGCAGCATCGGGGCCTTCAAAGTTCTCATTCAGGTCCTTATTAGCTGACCTCATCCAACCGCATGACTTGAAGGAGCTTTGCTCAGTTTTAGTGGTGTTTTCAAGTGAAGTTGCCAAGAAAATAGCAGAACAAAGAAATGCTGAGAAACAGATAAATGACCCACCACAGATTTCTCGTGCTTCATCTACTGTTGATGAGTCACAGCATCAGAAGGCCGAAGAGAAAGCTGCAGATGGCGAGTGTGGAAGTTCAAACCGAAGTGATAGGAGTGTACATGATAATTCCAATTCAGATAGTTCGGATATTACAAAAGCAAGGCCGATGTCCCCTGGAACTTTAGCTTTAATGTGTGATGAACGAGATACAATGTTCATGGGAGCTGGTCTAGCTGATGGGTCGGCAGGCCATGATTGCAACACATCATCACACATGCCTGATAAGTCTGTGTCAGAAGTCTACATCGAGCAAGAACGGATTGTGTTGACAAAGTTTCGAGATTGTCTTAATAAACTCATCACTCTGGGAGAGATAAAAGAAACAAAATTCACTTGTAGAAGCGAAGTGGGGAATGAAAATCTCAGCAACAATTTCACCTCAAATAATGGGTGCCAACAGAGATCTATTAGCAATGGGGTTGTAAAAAATGTGGCTCTCTCGGCACACAGAATACCGCCAGTCGGCGCTGCAGCTCGTCATCCAAATAACGATCTCCTACTCAAAATTCTACCACTTCCTAAAAATAGTAAGAGTAAACCACAAGTTGACAGAGAAGTCTAG | 1878 | 44.46 | MTVRSTSLGVVSFSFPSRRLSSSIKVLVISVGNREMDNLPPLNAQTDSGEPGNVVSSDVPAKRLARQLDFTGFGGAVLPEHPHFQSQPPCQQSESPAVMVVQSQSQPQSPQHLTVLPIVTKASHPSRKPDSPKSRSRSSVETKDATPKKQKQCNCKHSRCLKLYCECFASGIYCDGCNCTNCHNNVENEASRREAVETTLERNPNAFRPKIASSPHGTLESRDEIGEVVMLGKHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFEGSEERQALFHGDHANNLAYIQQAANAAITGAIGSSGYACLPTSKKRKGPELCFGPVGKDSPLNSIPQFHQANNVMSSGTSTSSPFPVAHVGNGSPAASGPSKFSFRSLLADLIQPHDLKELCSVLVVFSSEVAKKIAEQRNAEKQINDPPQISRASSTVDESQHQKAEEKAADGECGSSNRSDRSVHDNSNSDSSDITKARPMSPGTLALMCDERDTMFMGAGLADGSAGHDCNTSSHMPDKSVSEVYIEQERIVLTKFRDCLNKLITLGEIKETKFTCRSEVGNENLSNNFTSNNGCQQRSISNGVVKNVALSAHRIPPVGAAARHPNNDLLLKILPLPKNSKSKPQVDREV | 625 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 12383487 | 12390010 | - | CmPI595203_06g009050.1 | Cmu06g0905 | 418565 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmu06g0905 | 625 | PANTHER | TESMIN/TSO1-RELATED | 79 | 549 | IPR028307 | GO:0005634(PANTHER)|GO:0006355(PANTHER) | |
Cmu06g0905 | 625 | MobiDBLite | consensus disorder prediction | 85 | 116 | - | - | |
Cmu06g0905 | 625 | Pfam | Tesmin/TSO1-like CXC domain, cysteine-rich domain | 236 | 270 | IPR005172 | - | |
Cmu06g0905 | 625 | Pfam | Tesmin/TSO1-like CXC domain, cysteine-rich domain | 150 | 185 | IPR005172 | - | |
Cmu06g0905 | 625 | MobiDBLite | consensus disorder prediction | 81 | 143 | - | - | |
Cmu06g0905 | 625 | MobiDBLite | consensus disorder prediction | 412 | 477 | - | - | |
Cmu06g0905 | 625 | MobiDBLite | consensus disorder prediction | 433 | 462 | - | - | |
Cmu06g0905 | 625 | MobiDBLite | consensus disorder prediction | 416 | 432 | - | - | |
Cmu06g0905 | 625 | MobiDBLite | consensus disorder prediction | 126 | 143 | - | - | |
Cmu06g0905 | 625 | ProSiteProfiles | CRC domain profile. | 149 | 273 | IPR005172 | - | |
Cmu06g0905 | 625 | SMART | CXC_2 | 233 | 274 | IPR033467 | - | |
Cmu06g0905 | 625 | SMART | CXC_2 | 148 | 188 | IPR033467 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmu06g0905 | Cmu-Chr6:12383487 | Cmu08g1252 | Cmu-Chr8:24898923 | 1.50E-26 | dispersed | |
Cmu05g0537 | Cmu-Chr5:4608194 | Cmu06g0905 | Cmu-Chr6:12383487 | 2.00E-29 | transposed | |
Cmu11g0227 | Cmu-Chr11:2745170 | Cmu06g0905 | Cmu-Chr6:12383487 | 3.10E-170 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
6385 | PF03638 | TCR | 3.40E-12 | No_clan | Cmu | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmu06g0905 | - | - | - | 0.0 |