Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu06g0905 ATGACCGTCCGTTCGACATCCCTAGGCGTCGTCTCTTTTAGTTTTCCTTCTCGTCGGCTATCTTCGAGCATCAAAGTGCTTGTGATTTCAGTAGGGAATCGAGAGATGGATAATTTACCCCCGCTAAATGCTCAAACTGATAGTGGGGAACCGGGTAATGTTGTTTCATCTGATGTTCCTGCTAAAAGACTAGCTAGGCAGCTGGATTTTACGGGATTTGGTGGTGCAGTCTTGCCGGAGCATCCTCATTTTCAGTCTCAGCCTCCGTGTCAACAATCAGAGTCACCGGCCGTCATGGTGGTGCAGAGTCAGTCGCAGCCACAGTCCCCACAACATTTGACGGTTTTGCCCATTGTAACAAAAGCGTCTCATCCTTCGAGAAAGCCAGATTCTCCAAAGTCAAGATCAAGGTCTAGTGTTGAAACAAAAGATGCTACTCCAAAGAAACAAAAACAGTGCAACTGCAAACACTCACGCTGCTTAAAGCTGTACTGCGAGTGCTTTGCATCTGGAATATACTGTGATGGTTGCAATTGCACAAATTGCCATAACAATGTTGAGAATGAAGCTTCTAGGAGAGAAGCAGTCGAAACTACTTTAGAACGTAATCCAAATGCATTCCGACCAAAAATTGCTAGCAGCCCACATGGAACACTAGAGAGCAGGGATGAGATTGGAGAAGTAGTAATGCTGGGAAAGCACAACAAAGGATGCCATTGCAAGAAATCAGGTTGCTTAAAGAAGTATTGTGAGTGCTTTCAGGCCAATATTCTCTGCTCTGAAAACTGCAAGTGCATGGACTGTAAGAATTTTGAAGGCAGTGAAGAGAGACAGGCTCTTTTCCATGGTGACCATGCCAACAACTTGGCTTATATTCAACAGGCAGCAAATGCTGCAATAACTGGAGCTATTGGATCCTCTGGTTATGCTTGCCTTCCCACTTCAAAGAAAAGAAAAGGTCCAGAGCTATGCTTTGGCCCTGTAGGGAAGGATTCCCCCCTCAACAGCATACCACAATTTCATCAGGCAAATAATGTAATGTCTTCAGGCACGTCTACTTCATCTCCCTTCCCAGTTGCTCATGTTGGAAATGGCAGCCCTGCAGCATCGGGGCCTTCAAAGTTCTCATTCAGGTCCTTATTAGCTGACCTCATCCAACCGCATGACTTGAAGGAGCTTTGCTCAGTTTTAGTGGTGTTTTCAAGTGAAGTTGCCAAGAAAATAGCAGAACAAAGAAATGCTGAGAAACAGATAAATGACCCACCACAGATTTCTCGTGCTTCATCTACTGTTGATGAGTCACAGCATCAGAAGGCCGAAGAGAAAGCTGCAGATGGCGAGTGTGGAAGTTCAAACCGAAGTGATAGGAGTGTACATGATAATTCCAATTCAGATAGTTCGGATATTACAAAAGCAAGGCCGATGTCCCCTGGAACTTTAGCTTTAATGTGTGATGAACGAGATACAATGTTCATGGGAGCTGGTCTAGCTGATGGGTCGGCAGGCCATGATTGCAACACATCATCACACATGCCTGATAAGTCTGTGTCAGAAGTCTACATCGAGCAAGAACGGATTGTGTTGACAAAGTTTCGAGATTGTCTTAATAAACTCATCACTCTGGGAGAGATAAAAGAAACAAAATTCACTTGTAGAAGCGAAGTGGGGAATGAAAATCTCAGCAACAATTTCACCTCAAATAATGGGTGCCAACAGAGATCTATTAGCAATGGGGTTGTAAAAAATGTGGCTCTCTCGGCACACAGAATACCGCCAGTCGGCGCTGCAGCTCGTCATCCAAATAACGATCTCCTACTCAAAATTCTACCACTTCCTAAAAATAGTAAGAGTAAACCACAAGTTGACAGAGAAGTCTAG 1878 44.46 MTVRSTSLGVVSFSFPSRRLSSSIKVLVISVGNREMDNLPPLNAQTDSGEPGNVVSSDVPAKRLARQLDFTGFGGAVLPEHPHFQSQPPCQQSESPAVMVVQSQSQPQSPQHLTVLPIVTKASHPSRKPDSPKSRSRSSVETKDATPKKQKQCNCKHSRCLKLYCECFASGIYCDGCNCTNCHNNVENEASRREAVETTLERNPNAFRPKIASSPHGTLESRDEIGEVVMLGKHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFEGSEERQALFHGDHANNLAYIQQAANAAITGAIGSSGYACLPTSKKRKGPELCFGPVGKDSPLNSIPQFHQANNVMSSGTSTSSPFPVAHVGNGSPAASGPSKFSFRSLLADLIQPHDLKELCSVLVVFSSEVAKKIAEQRNAEKQINDPPQISRASSTVDESQHQKAEEKAADGECGSSNRSDRSVHDNSNSDSSDITKARPMSPGTLALMCDERDTMFMGAGLADGSAGHDCNTSSHMPDKSVSEVYIEQERIVLTKFRDCLNKLITLGEIKETKFTCRSEVGNENLSNNFTSNNGCQQRSISNGVVKNVALSAHRIPPVGAAARHPNNDLLLKILPLPKNSKSKPQVDREV 625
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 12383487 12390010 - CmPI595203_06g009050.1 Cmu06g0905 418565

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu06g0905 625 PANTHER TESMIN/TSO1-RELATED 79 549 IPR028307 GO:0005634(PANTHER)|GO:0006355(PANTHER)
Cmu06g0905 625 MobiDBLite consensus disorder prediction 85 116 - -
Cmu06g0905 625 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 236 270 IPR005172 -
Cmu06g0905 625 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 150 185 IPR005172 -
Cmu06g0905 625 MobiDBLite consensus disorder prediction 81 143 - -
Cmu06g0905 625 MobiDBLite consensus disorder prediction 412 477 - -
Cmu06g0905 625 MobiDBLite consensus disorder prediction 433 462 - -
Cmu06g0905 625 MobiDBLite consensus disorder prediction 416 432 - -
Cmu06g0905 625 MobiDBLite consensus disorder prediction 126 143 - -
Cmu06g0905 625 ProSiteProfiles CRC domain profile. 149 273 IPR005172 -
Cmu06g0905 625 SMART CXC_2 233 274 IPR033467 -
Cmu06g0905 625 SMART CXC_2 148 188 IPR033467 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu06g0905 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu06g0905 Cmu-Chr6:12383487 Cmu08g1252 Cmu-Chr8:24898923 1.50E-26 dispersed
Cmu05g0537 Cmu-Chr5:4608194 Cmu06g0905 Cmu-Chr6:12383487 2.00E-29 transposed
Cmu11g0227 Cmu-Chr11:2745170 Cmu06g0905 Cmu-Chr6:12383487 3.10E-170 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmu08g1252 . 325 450 CPP Transcription Factor Family AT3G22780 57.1 2.5e-38 157.5
Cmu08g1252 . 297 450 CPP Transcription Factor Family AT4G14770 51.3 5.7e-40 162.9
Cmu11g0227 . 92 521 CPP Transcription Factor Family AT2G20110 61.9 7.3e-142 501.1
Cmu06g0905 . 65 579 CPP Transcription Factor Family AT2G20110 50.7 8.7e-127 451.1
Cmu08g1252 . 325 459 CPP Transcription Factor Family AT3G04850 52.2 5.7e-37 152.9
Cmu11g0227 . 29 528 CPP Transcription Factor Family AT4G29000 56.8 2.5e-151 532.7
Cmu06g0905 . 55 578 CPP Transcription Factor Family AT4G29000 53.3 3.0e-144 509.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002094 2 3 2 1 2 2 4 2 2 2 0 2 3 2 2 3 2 4 3 2 2 2 2 2 2 2 2 3 2 1 65
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6385 PF03638 TCR 3.40E-12 No_clan Cmu TF