Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu06g0937 ATGGAGACTGAGTCTAGAATTTTAAACCCATCTCCTCCGCCGTCGCCGTCATCATCTGGAAGTTTATCCACGGTTCCCGATCATCACCCGTCGTCGTCGTCGTCGTCGTCGGCGGTCGAGTCGAACCGGAAACGAGGGAAACGGCCGAGAGAAAATAACAACAACAATAGTAAACACCCGGTTTTCCGTGGGGTCCGAATGAGGGCTTGGGGAAAGTGGGTTTCCGAAATTCGTGAACCCCGAAAAAAAAGCCGGATCTGGCTCGGCACTTTCTCCACCCCTGAAATGGCCGCACGTGCTCACGACGTCGCCGCCCTCGCCATTAAAGGCACCGCCGCCATTCTCAACTTCCCTGAACTCGCCCATCACTTCCCCCGCCCCGCCTCCTCCTCCCCCCGCGACGTTCAGGCCGCCGCCGCCAAAGCCGCCGCCATGGAAATCCCAACTCCCTCACTTTTTTCCTCTTCCTCCTCCGCCTCCTCCTCCTCCTCTTCCTCCTCCGCCTTGTGTCCATCCTCGCCGGAGGAACTGAGTGAAATCCTGGAACTCCCGAGTTTAGGAACGAGTTACGAAACAGCCGAGTTAGGAAACGAGTTCGTATTCGTGGACTCAGTGGAAGGCTGGCTTTATTCTTACCCATGGTATAACAGAGTCAATAATGCAGATCACCAAGTACAAGAGGATTATGGATTCTTCAAAGAACAGATTTTAATGGCGGATTATACAGACACTTTAATTCCATCTTCAACTTTCGAAGCTTTCTTATGGCAAAATTAA 777 52.77 METESRILNPSPPPSPSSSGSLSTVPDHHPSSSSSSSAVESNRKRGKRPRENNNNNSKHPVFRGVRMRAWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALAIKGTAAILNFPELAHHFPRPASSSPRDVQAAAAKAAAMEIPTPSLFSSSSSASSSSSSSSALCPSSPEELSEILELPSLGTSYETAELGNEFVFVDSVEGWLYSYPWYNRVNNADHQVQEDYGFFKEQILMADYTDTLIPSSTFEAFLWQN 258
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 13144561 13145337 + CmPI595203_06g009370.1 Cmu06g0937 418597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu06g0937 258 ProSiteProfiles AP2/ERF domain profile. 61 118 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu06g0937 258 PRINTS Ethylene responsive element binding protein signature 84 100 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu06g0937 258 PRINTS Ethylene responsive element binding protein signature 62 73 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu06g0937 258 MobiDBLite consensus disorder prediction 1 63 - -
Cmu06g0937 258 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 41 203 IPR051032 -
Cmu06g0937 258 FunFam Ethylene-responsive transcription factor 2 60 119 - -
Cmu06g0937 258 Gene3D AP2/ERF domain 61 119 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu06g0937 258 CDD AP2 62 120 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu06g0937 258 SMART rav1_2 61 124 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu06g0937 258 SUPERFAMILY DNA-binding domain 61 119 IPR016177 GO:0003677(InterPro)
Cmu06g0937 258 Pfam AP2 domain 60 110 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu06g0937 258 MobiDBLite consensus disorder prediction 20 40 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu06g0937 Cmu-Chr6:13144561 Cmu11g1516 Cmu-Chr11:27478290 2.00E-49 dispersed
Cmu06g0243 Cmu-Chr6:2695589 Cmu06g0937 Cmu-Chr6:13144561 5.20E-34 transposed
Cmu11g0216 Cmu-Chr11:2628146 Cmu06g0937 Cmu-Chr6:13144561 1.20E-49 wgd
Cmu06g0937 Cmu-Chr6:13144561 Cmu09g0172 Cmu-Chr9:1907440 9.70E-36 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6387 PF00847 AP2 2.30E-13 CL0081 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu06g0937 K09286 - csv:101219745 339.732