Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu06g1017 ATGAACATGGCCAATTCAGGTGCAGCTCCTCCTCAGGGGTCATTGGAGACTTGTAGCCCTTTCCCTAGTGCTCGTTCCAAGAGAGTTTATGTGAGGAAGGTTTGGTTAAAGTTGGGAATCCTGAGGCATGTGGAGTGGGCAGGTTTGGGACTCAATTGGGGCGTCAAGTGGCATCTTGGTTTTATGGGATGGTTTTCTTTTAGGGCAGTTGATGTTGTTCGTGGGAAATTCACCATCTCGTTGGTTTTTGACTTTCTTAATATAAGGGCCGATTATTTGATAAAGGAAGAGGCCCGGTATCTGTGTGCTGCAATGGGGCATGAAAATGAATCCTTAGATGAATTTGTGGAAGCGCACAAAACCTGCTTGAATGATCTTATGTACTTCCCCACTAGGAATGCTTATGGACTTTCGAGCGTTGCTGGAAACCATGAGAAACTAGCGGCCTTGCAGGATGAATTTGAGTATGTTAAAAGGAAAATGGATGATGATACTGAGAAGGCTGTCCGGTTGGAGAAGAAGGTTAAAGTTCTCACACATGGCTATGAGACACGGTCAAAACAAAGCCTTTGGCCGCAAATTGAGGCAACTTTCAAGCAGATAGACACTGCAGCAACAGAGCTGGAGTGCTTTGAAGCTCTTCAAAAACAAGAGATATCAGCTGCTTCACACAGAATTAGTGGTATCTGGGAAGAGGTTCAGAAACAAAAAGAGCTGGAGAGAACTCTGCAGCTGCGTTATGGAAATCTTTTGGGGGACTTGGAAAAGATGCAGAAAATCATGGTTGATCTCAAAGCACAGGCACAAAAGGAAGAAGAAATCGCAGCGCAGAGCCGTGCTCTTCAGTTGGCTGAGGCTGAGGCTGAGGCTGATCAAACCGTTGGAGAAAATGCTGATAGTTCTGAAGCCATGTCTGCATCAGTAGCAGTTGATTGTGAAAATTCTGTGCCTGTTACCTCAACCTCCAATGAATTAACAGGTGAACAACTGAACTCGTCCGTGGGACATGAACATGAAACTTCTAATGCCATGGATATCGACACAGAAAAAGAAAGTGTACCGGTGAGCTTGGATATTGGTTTATCTGATAACAAACTACCTTCTACAGTGCGAGAGAATGCATCATTGCCTGACAATGGCTTTGAAGATTATGATAAAAGTCAAACCACTGATGTTCCCTCCCAAGAACTCCCGGGTCCTGTTACAAATGGCACTCCAGATGTGACTGTTACAGTGGAAAATAACATCAGCAACGATTCGGTTGATGGTACAGCTATTGAAAATGTTAAATGTAGGACTGATATCGTCGAGGAAGTCAAAGATGCTGAAACTCAACAGTCTGTGACCGAAACTGAAAATAACTCAGATGTGCATTTGACTAATCTGGATTCTGCTGCACCGGCATCTTCTAATGAGGGTAACGGGGAACTCCCTAGTGGCGAAGGGGAAGCAATGGAATCAAATGTCTAG 1470 44.42 MNMANSGAAPPQGSLETCSPFPSARSKRVYVRKVWLKLGILRHVEWAGLGLNWGVKWHLGFMGWFSFRAVDVVRGKFTISLVFDFLNIRADYLIKEEARYLCAAMGHENESLDEFVEAHKTCLNDLMYFPTRNAYGLSSVAGNHEKLAALQDEFEYVKRKMDDDTEKAVRLEKKVKVLTHGYETRSKQSLWPQIEATFKQIDTAATELECFEALQKQEISAASHRISGIWEEVQKQKELERTLQLRYGNLLGDLEKMQKIMVDLKAQAQKEEEIAAQSRALQLAEAEAEADQTVGENADSSEAMSASVAVDCENSVPVTSTSNELTGEQLNSSVGHEHETSNAMDIDTEKESVPVSLDIGLSDNKLPSTVRENASLPDNGFEDYDKSQTTDVPSQELPGPVTNGTPDVTVTVENNISNDSVDGTAIENVKCRTDIVEEVKDAETQQSVTETENNSDVHLTNLDSAAPASSNEGNGELPSGEGEAMESNV 489
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 15934336 15938555 - CmPI595203_06g010170.1 Cmu06g1017 418677

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu06g1017 489 Coils Coil 254 287 - -
Cmu06g1017 489 PANTHER CELL DIVISION CYCLE 5-LIKE PROTEIN 89 261 IPR047242 GO:0000398(InterPro)|GO:0000398(PANTHER)|GO:0000974(InterPro)|GO:0000974(PANTHER)|GO:0005681(PANTHER)
Cmu06g1017 489 MobiDBLite consensus disorder prediction 382 406 - -
Cmu06g1017 489 MobiDBLite consensus disorder prediction 1 20 - -
Cmu06g1017 489 MobiDBLite consensus disorder prediction 440 489 - -
Cmu06g1017 489 MobiDBLite consensus disorder prediction 294 339 - -
Cmu06g1017 489 MobiDBLite consensus disorder prediction 287 406 - -
Cmu06g1017 489 MobiDBLite consensus disorder prediction 446 476 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu06g1017 K12860 - - csv:101206265 567.77
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmu06g1018 . 1 634 MYB-Related Transcription Factor Family AT1G09770 83.6 9.5e-298 1019.6
Cmu06g1017 . 90 273 MYB-Related Transcription Factor Family AT1G09770 56.5 8.6e-49 192.6
Cmu05g1516 . 211 663 MYB-Related Transcription Factor Family AT3G18100 57.8 4.1e-150 528.9
Cmu05g1516 . 211 663 MYB-Related Transcription Factor Family AT3G18100 57.8 4.1e-150 528.9
Cmu06g1018 . 1 634 MYB-Related Transcription Factor Family AT1G09770 83.6 9.5e-298 1019.6
Cmu06g1017 . 90 273 MYB-Related Transcription Factor Family AT1G09770 56.5 8.6e-49 192.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003356 2 0 1 2 1 3 2 2 2 1 1 1 2 1 2 3 2 2 2 2 5 1 1 1 1 1 0 1 2 2 49