Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu06g1018 ATGAGGATTATGATAAAAGGTGGTGTGTGGAAGAACACCGAAGATGAGATCCTTAAAGCCGCGGTTATGAAATATGGCAAAAACCAATGGGCTCGAATTTCGTCGCTTCTTGTCCGGAAATCTGCTAAGCAGTGCAAGGCTCGCTGGTATGAGTGGCTTGACCCCTCCATTAAAAAGACTGAGTGGACAAGAGAGGAGGATGAGAAACTACTCCATCTTGCTAAGCTCATGCCAACCCAGTGGAGAACTATTGCACCAATTGTCGGGCGTACTCCATCCCAGTGTCTCGAGCGGTATGAGAAGCTTCTTGATGCTGCTTGTGTTAAGGATGACAATTACGAACCAGGAGATGACCCAAGAAAATTGCGCCCTGGAGAAATTGACCCAAACCCAGAGTCAAAGCCTGCACGTCCTGACCCTGTTGACATGGATGAAGATGAAAAGGAAATGCTTTCTGAAGCACGAGCAAGGTTAGCAAATACTAGGGGAAAGAAGGCAAAAAGGAAAGCCAGAGAGAAACAACTTGAAGAGGCCAGGAGGCTTGCTTCGCTACAAAAAAGGAGAGAGCTAAAAGCTGCAGGGATTGATACTCGACAACGGAAGAGAAAGAGAAAAGGAATAGATTACAATGCTGAAATTCCTTTTGAGAAAAGGCCTCCTCCAGGATTTTTTGATGTTAGTGAGGAAGATAGACCAGTGGAACAGCCCAAATTTCCAACAACAATTGAAGAACTAGAAGGCAAAAGAAGGGTTGATGTAGAGGCTCAATTAAGAAAGCAAGATATTGCAAAGAATAAAATTGCTCAGAGACAAGATGCTCCATCAGCTGTACTGCAAGCAAATAAGCTGAATGACCCAGAAATGGTGAGGAAAAGATCTAAACTTATGCTGCCTGCACCTCAAATTTCAGACCATGAATTGGAGGAAATTGCAAAAATGGGATATGCAAGTGATCTTCTAGCTGGTAATGAAGAGCTTGCAGAGGGAAGTGGTGCTACACGAGCTCTGCTTGCAAATTATGCACAGACACCACGACAAGGAATGACACCTTTTCGAACTCCCCAAAGGACGCCGGCTGGTAAGGGTGATGCTATAATGATGGAGGCAGAAAACCTTGCTAGGCTGAGAGAATCTCAGACTCCATTATTGGGAGGAGAGAATCCGGAGCTGCATCCTTCAGACTTTTCCGGGGTCACCCCAAGGAAAAAGGAGATTCAAACACCAAATCCGATGTTAACACCCTCAGCAACTCCTGGTGGTGTTGGTCTCACTCCTCGAAGTGGCATGACACCAGCTAGGGATGCTTACTCATTTGGAATGACTCCAAAAGGAACGCCTATTAGAGATGAGTTACGTATCAATGAAGATATGGACGCACATGATAGTGCAAAACTTGAGTCTCAAAGACAAGCTGATTTGAGAAGGAATCTTAGCCTAGGATTAGGCAATCTTCCACAGCCTAAGAATGAGTACCAGGTAGTTATGCAACCAATTCCAGAAGACAAAGAAGAACCTGAGGAGATGATTGAAGAGGACATGTCTGACAGGATTGCTAGAGAACGAGCTGAGGAAGAAGCAAGGCGGCAGGCTTTGCTTAGGAAAAGATCAAAAGTACTACAAAGGGAGCTTCCTCGGCCTCCTACTGCTTCTTTGGAACTTATTAGAAATTCTTTGATGAGAGCTGATGGAGACAAGAGCTCATTTGTTCCGCCTACCCCTATTGAGCAGGCTGATGAAATGATAAGAAAGGAACTTCTTGCTTTGTTAGAGCATGATAATGCAAAGTACCCAATTGATGAAAAGGCTAGCAAGGAGAGAAAGAAAGGTTCAAAGCGCACTGGAAATGGACCTACTGCAGTCATCCCCACAATAGATGATTTTGAAGAAACTGTGATGGAAGAGCCAAGAAGAGACATTTCATATGTGAAAAATGTCGGTTGGAGAAGTTGCTTGCTCCTATGCTGCTCTCATCCTCTACGACGACAATATCCTTATTACTGCAGAAAAGATTGCTGCGCTTGTAAAGGCAGCTAA 2034 44.49 MRIMIKGGVWKNTEDEILKAAVMKYGKNQWARISSLLVRKSAKQCKARWYEWLDPSIKKTEWTREEDEKLLHLAKLMPTQWRTIAPIVGRTPSQCLERYEKLLDAACVKDDNYEPGDDPRKLRPGEIDPNPESKPARPDPVDMDEDEKEMLSEARARLANTRGKKAKRKAREKQLEEARRLASLQKRRELKAAGIDTRQRKRKRKGIDYNAEIPFEKRPPPGFFDVSEEDRPVEQPKFPTTIEELEGKRRVDVEAQLRKQDIAKNKIAQRQDAPSAVLQANKLNDPEMVRKRSKLMLPAPQISDHELEEIAKMGYASDLLAGNEELAEGSGATRALLANYAQTPRQGMTPFRTPQRTPAGKGDAIMMEAENLARLRESQTPLLGGENPELHPSDFSGVTPRKKEIQTPNPMLTPSATPGGVGLTPRSGMTPARDAYSFGMTPKGTPIRDELRINEDMDAHDSAKLESQRQADLRRNLSLGLGNLPQPKNEYQVVMQPIPEDKEEPEEMIEEDMSDRIARERAEEEARRQALLRKRSKVLQRELPRPPTASLELIRNSLMRADGDKSSFVPPTPIEQADEMIRKELLALLEHDNAKYPIDEKASKERKKGSKRTGNGPTAVIPTIDDFEETVMEEPRRDISYVKNVGWRSCLLLCCSHPLRRQYPYYCRKDCCACKGS 677
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 15943587 15951623 - CmPI595203_06g010180.1 Cmu06g1018 418678

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu06g1018 677 MobiDBLite consensus disorder prediction 382 421 - -
Cmu06g1018 677 SUPERFAMILY Homeodomain-like 33 106 IPR009057 -
Cmu06g1018 677 Coils Coil 167 187 - -
Cmu06g1018 677 FunFam CDC5 cell division cycle 5-like 5 59 - -
Cmu06g1018 677 ProSiteProfiles Myb-like domain profile. 2 53 IPR001005 -
Cmu06g1018 677 MobiDBLite consensus disorder prediction 597 612 - -
Cmu06g1018 677 Pfam pre-mRNA splicing factor component 407 636 IPR021786 -
Cmu06g1018 677 MobiDBLite consensus disorder prediction 157 176 - -
Cmu06g1018 677 MobiDBLite consensus disorder prediction 213 234 - -
Cmu06g1018 677 SMART sant 58 105 IPR001005 -
Cmu06g1018 677 SMART sant 6 55 IPR001005 -
Cmu06g1018 677 MobiDBLite consensus disorder prediction 400 414 - -
Cmu06g1018 677 CDD SANT 10 53 IPR001005 -
Cmu06g1018 677 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 2 57 IPR017930 -
Cmu06g1018 677 ProSiteProfiles Myb-like domain profile. 54 103 IPR001005 -
Cmu06g1018 677 MobiDBLite consensus disorder prediction 597 621 - -
Cmu06g1018 677 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 58 107 IPR017930 -
Cmu06g1018 677 Gene3D - 5 58 - -
Cmu06g1018 677 Pfam Myb-like DNA-binding domain 10 70 - -
Cmu06g1018 677 PANTHER CELL DIVISION CYCLE 5-LIKE PROTEIN 1 637 IPR047242 GO:0000398(InterPro)|GO:0000398(PANTHER)|GO:0000974(InterPro)|GO:0000974(PANTHER)|GO:0005681(PANTHER)
Cmu06g1018 677 CDD SANT_CDC5_II 55 106 IPR047240 -
Cmu06g1018 677 Gene3D - 59 114 - -
Cmu06g1018 677 FunFam CDC5 cell division cycle 5-like 60 120 - -
Cmu06g1018 677 Coils Coil 514 534 - -
Cmu06g1018 677 MobiDBLite consensus disorder prediction 110 150 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu06g1018 K12860 - - csv:101205030 1197.57
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu06g1018 Cmu-Chr6:15943587 Cmu02g1131 Cmu-Chr2:23403428 9.10E-09 dispersed
Cmu06g1018 Cmu-Chr6:15943587 Cmu11g0310 Cmu-Chr11:3638316 2.70E-08 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmu06g1018 . 1 634 MYB-Related Transcription Factor Family AT1G09770 83.6 9.5e-298 1019.6
Cmu06g1017 . 90 273 MYB-Related Transcription Factor Family AT1G09770 56.5 8.6e-49 192.6
Cmu05g1516 . 211 663 MYB-Related Transcription Factor Family AT3G18100 57.8 4.1e-150 528.9
Cmu05g1516 . 211 663 MYB-Related Transcription Factor Family AT3G18100 57.8 4.1e-150 528.9
Cmu06g1018 . 1 634 MYB-Related Transcription Factor Family AT1G09770 83.6 9.5e-298 1019.6
Cmu06g1017 . 90 273 MYB-Related Transcription Factor Family AT1G09770 56.5 8.6e-49 192.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003356 2 0 1 2 1 3 2 2 2 1 1 1 2 1 2 3 2 2 2 2 5 1 1 1 1 1 0 1 2 2 49
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6390 PF11831 Myb_Cef 1.70E-51 No_clan Cmu TF