Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu06g1072 ATGGGTTCACCAAAAACTGGACAACATGTGAGCTTTAATGCTCCGAGGCCATTTGGGCACAGGCTGAAATCGGATATGAAAGAGACGTTTTTCCCTGATGATCCGTTCAGACAGTTTCGAAATGAAAGAGACGCAATACAAAGAGTGAAAAAGGGGTTCCAATATTTCATACCCATATTGGAATGGTTTCCCAAATACAATTTGAATATGTTTAAGTATGATTTGCTTGCTGGTATTACCATTACCAGCCTTGCTATTCCTCAAGGCATTAGTTATGCCAAACTCGCCGTCCTCCCTCCCATTATCGGCCTCTATTCGAGCTTCGTTCCGCCACTTGTGTACGCAGTGTTTGGAAGCTCAAAGCATCTGGCGGTGGGAACGGTGGCTGCATGTTCGTTGCTGATATCAGAAATTATTGGAGAAGTGGCTTCACCGGAAGAAGAACCCACATTGTATCTCCACTTGGTTTTCACCGCCACTTTTATCACCGGCATGATGCAGGCTGCGTTAGGCTTTCTAAGATTGGGAATTTTGGTGGATTTCTTATCGCACTCAACAATCCTTGGGTTTATGGGAGGAACGGCTGTGATCATTTCCCTTCAACAACTAAAAGGCATATTTGGACTGACTCATTTCACCTCTAAAACTGACGTTTATTCCGTACTTCATGCCGTTTTCTCCCTTAGAAAAGAGTGGAAATGGCAAAGTGCTGTGGTGGGCATCGTTTTCCTTGTATTCCTCCAGTTTACTCGCTACTTGAGAAACAGAAACCCGAAGCTATTTTGGGTGTCAGCGATGGCTCCCATGGTGACTGTAATAATAGGGTGTTTGTTTGCATATTTCATCAATGGAACTCAGCATGGAATCTTAACTGTGGGTCATTTGAGCAAAGGAATAAACCCTCTTTCTATTCACTTCTTGAACTTTGACTCTAAATATTTATCAGCTGTGGTACAAGCTGGGTTGATCACTGGCCTTGTCGCTATGGCGGAAGGAATAGCAATTGGTCGGAGCTTTGCAATTATGAAAAATGAACAAATCGATGGCAATAAAGAGATGATAGCTTTTGGTTTGATGAACATAGTGGGATCTTTCACTTCCTGCTACTTAACCACTGGGCCATTCTCAAAGACTGCAGTGAACTTCAATGCTGGGTGTAGGACAGCAATGTCAAACATAGTTATGGCAATCTTCATGGCTCTCACCCTCCTCTTTCTAGCTCCTCTCTTCAGCTACACACCTCTTGTAGCCCTTGCTGCCATTATCATGTCCGCCATGCTTGGTCTCATCAAATATGATGAAATGTATCATCTTCTCAAAGTCGACAAATTCGATTTCTGCATTTGTATGGCAGCTTTCTTGGGTGTTGCCTTCTTAAGCATGGATGTCGGAATCATGCTTTCGGTGGGACTTGCTTTGTTGAGAGCTCTTCTTTACATGGCAAGACCAGCTACTTGCAAGCTCGGGAAAATACCAAACTCCAGTTTGTACAGAGATGTGGAGCAGTATCCTAATGCAACTAGAGCCCATGGAATTATGGTTCTTCAACTTGGTTCCCCTATTTATTATGCCAACTCCAACTACATCAGAGAAAGGATTTTCAGATGGGTTCGTGATGAGCTAGTCGACTCCAAAGATGGATCCGTCGAACATGTACTCTTAGAGTTGAGCGGAGTTACCTCAATCGACATGACAGGGATTGAAACTCTAGTCGAAATCCATAGATCATTACAAGCAAACGGAATTCAGATGGGAATTGTAAACCCAAGAATTGTAGTGATGGAGAAGATGATTGCTTCGGAATTCACAGACACGATCGGGAAAGAGAACATCTATTTGTCGGTAGACGAAGGAGTGGAAAGCTTACTTTCTTCTGGTTTGGTCTTGTTCTTATCCGAGGGCACTCGAGAGATCATTTTAGGCTCGGAATATGGCCTCAAGGAGATGCTCGGCCCTAGCCAAACATGA 1968 43.6 MGSPKTGQHVSFNAPRPFGHRLKSDMKETFFPDDPFRQFRNERDAIQRVKKGFQYFIPILEWFPKYNLNMFKYDLLAGITITSLAIPQGISYAKLAVLPPIIGLYSSFVPPLVYAVFGSSKHLAVGTVAACSLLISEIIGEVASPEEEPTLYLHLVFTATFITGMMQAALGFLRLGILVDFLSHSTILGFMGGTAVIISLQQLKGIFGLTHFTSKTDVYSVLHAVFSLRKEWKWQSAVVGIVFLVFLQFTRYLRNRNPKLFWVSAMAPMVTVIIGCLFAYFINGTQHGILTVGHLSKGINPLSIHFLNFDSKYLSAVVQAGLITGLVAMAEGIAIGRSFAIMKNEQIDGNKEMIAFGLMNIVGSFTSCYLTTGPFSKTAVNFNAGCRTAMSNIVMAIFMALTLLFLAPLFSYTPLVALAAIIMSAMLGLIKYDEMYHLLKVDKFDFCICMAAFLGVAFLSMDVGIMLSVGLALLRALLYMARPATCKLGKIPNSSLYRDVEQYPNATRAHGIMVLQLGSPIYYANSNYIRERIFRWVRDELVDSKDGSVEHVLLELSGVTSIDMTGIETLVEIHRSLQANGIQMGIVNPRIVVMEKMIASEFTDTIGKENIYLSVDEGVESLLSSGLVLFLSEGTREIILGSEYGLKEMLGPSQT 655
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 20576631 20580638 + CmPI595203_06g010720.1 Cmu06g1072 418732
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu06g1072 655 CDD STAS_SulP_like_sulfate_transporter 503 615 - -
Cmu06g1072 655 Gene3D STAS domain 482 624 IPR036513 -
Cmu06g1072 655 FunFam Sulfate transporter 31 482 625 - -
Cmu06g1072 655 NCBIfam sulfate permease 58 617 IPR001902 GO:0016020(InterPro)|GO:0055085(InterPro)
Cmu06g1072 655 Pfam STAS domain 503 617 IPR002645 -
Cmu06g1072 655 SUPERFAMILY SpoIIaa-like 505 621 IPR036513 -
Cmu06g1072 655 ProSitePatterns SLC26A transporters signature. 100 121 IPR018045 GO:0008271(InterPro)|GO:0008272(InterPro)
Cmu06g1072 655 ProSiteProfiles STAS domain profile. 502 622 IPR002645 -
Cmu06g1072 655 Pfam Sulfate permease family 71 452 IPR011547 GO:0016020(InterPro)
Cmu06g1072 655 PANTHER SULFATE TRANSPORTER 43 621 IPR001902 GO:0005887(PANTHER)|GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu05g0533 Cmu-Chr5:4576573 Cmu06g1072 Cmu-Chr6:20576631 1.00E-198 dispersed
Cmu06g1072 Cmu-Chr6:20576631 Cmu09g0698 Cmu-Chr9:6481213 1.20E-199 dispersed
Cmu06g1072 Cmu-Chr6:20576631 Cmu06g1073 Cmu-Chr6:20606930 0.00E+00 tandem
Cmu06g1072 Cmu-Chr6:20576631 Cmu09g0211 Cmu-Chr9:2173488 2.00E-170 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu06g1072 K17471 - csv:116402148 1116.29