Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu06g1076 ATGAATCCTAAATCCCATTTGAACCCTCTTTTCCATTTCTCCCTCCTCCTCCTCCTCCTCCTCCTCCGCCTCTCCGCCGCCCTCCCCTCCGTCGGCCATGGCAGTCTCTCCGACGCCGAAGCTCTCTTCATCCGCCACCGCCAGCTTCTTTACTACAGAGACGAGTGGGGTGACCGTGGGGAACAACTCACTGTCGACCCATCTCTTATTTTCGAAAATGAGAGAATTAGAAATGCTTACATTGCACTTCAAGCTTGGAAACTAGCCATTTTATCAGACCCTCTTAATCAAACCGCCAATTGGGTCGGATCTAATGTCTGCAGCTACTTCGGCGTTTTCTGTGCTCCCGCATTGGACAACCCCAAAATCCGTACCGTCGCCGGAATCGATCTCAACCACGGCGACATTGCCGGATACCTCCCTGAAGAGCTCGGTTTGCTTACCGATCTTGCATTGTTCCACATCAACTCTAACAGATTCTGCGGTACTTTACCCCACAAATTCGACCGTCTCAAGTTGCTTTACGAATTGGATCTCAGTAATAACCGCTTCGCCGGCAAGTTCCCCGACGTCGTTCTCAGGCTTCCGACGCTCAAGTTCTTGGATCTGAGGTTTAATGAATTTGAAGGGAATGTACCTAGAGAGCTGTTCGACAAGGATTTGGACGCTATTTTTATTAACCACAACAGGTTTAGATTCGAACTGCCGGATAATTTTGGGAACTCGCCGGTGTCGGTGATTGTGCTTGCGAACAATAAGTTCCATGGATGTGTGCCTTCGAGCTTGGGGAATATGACGAGGCTGAATGAGATTATTCTGATGAACAATGGGCTTAATTCTTGCTTGCCGCCGGAAATTGGGGCGTTGAAGAACTTGACGGTGTTTGATGTTAGTTCGAATGATTTGGTGGGTCCGTTGCCGGAGAGTTTTGGAGGGCTTGTGAGTTTGGAGCAACTTAATGTGGCGAATAATTTTCTTTCTGGGAAGATTCCGGAGAGTATTTGTAAGTTGCCTAAGCTTCAGAACTTTACGTTCTCGAATAACTTCTTCTCCGGTGAGCCACCGGTATGTTTGAGGCTTCCGGATTTCAGTGATCGGAGGAATTGCTTGGCTGGAAGGCCCGGGCAGCGGTCGACTGTGCAATGTAGGACGTTCTTGTCGAGACCTGTTGATTGTAATGCGTTTAAATGCGGTGGTTCATCTTCTGGTTCGCCTTCTACTCCATTTACTCCGCCAGTGGTTTCGCCCTCTTCGCCTCCGTCACCGTCAGGGGCGGCGTCTCCTTCATCGCCGTCTCATTCTCCCAATGCACCACCGGCGCCACCGCTCTCGCCCCATTTTCCTCCTCTGTCGCCACAATCGCCACCGTCGCCGCCTTCTTCCCCATCTACGCCGTCGCAGCCGTCGACACCGTCGTCGCCTTCTTCCCCTTCGACACCGTCACAGCCGTCGACACCGCCGTCGCCTTCTTCCCCATCGACGCCGTCACAGCCGTCGACACCGCCGTCGCCTTCTTCTCCATCTACCCCTTCAACTCCTTCCACCCCGCCCCATTTTCCCTCTCCATCGGCGCCGTCGCCTTCATCTCCGCCTCGAGGTCATGCTCCCCCGTCATTACCGTCACCTTCATCGCCCCCACAAGGCCATACTCCGCCGTCTGAGCCCTCACCATCATCACCACCCCACGGCCATACTCCGCCGGGTCCACCTTCGTCTGAGCCCTCGCCACCATCGCCGTCACAAGGTCACAATCCGTCGGCTCCTCCTACGTCCGAGCCCTCACCACCATTGCCGCCACAAGGTCACACTCCGCCGGCTCCTCCTTCGCCGTCCGAGCCGTCGCCTTCATCCCCGCCACACGTTAACACTCCGGCCATTCCCCCTTCGCCATCCGAGCCATCACCTTCCTCACCGCCTCAAGGCCATGTTCCTCCGGCGGAGCCTTCTCCTCCAGGAACAGCATCACCACCAGCACCACCATTCCCAGTTTACACTCCGCCTCCGCCACAGTTCCCTGATTTCCCTTCGCCACCATCTACCCAACCTCCGGTCTACTGCCCACGATCCCCATATCCACCATCTCCTCCATCCTACTCCCCAAACCCACCTCTCAATCACCCCAACTCTCCGCCGCCGCCGCCGCTACCAGTTTATCCTCCCCCTCCCCCTGTTCATACAACCCCGTCGCCGCTTCCTCTTCCATGCATACAACCTCCCCCACCAAATGTTAAATATTCAGGACCGCCGCCCCCTCCACCAACACCTTCATCTCCAATTCACTATAATCCCCCACCACCGCCGGTCCATTACCAAGCTCCTCCCTCACCTTCACCACCGGTCAGGGTTTATCCGCCGCCGTCCCCAACTCCCCCACCTCCAGTGGTTTACGAAAGCCCGCCACCGCCAGTCGTCTACCAAAGCCCACCCCCGCCTCCAACTCCAGTATACGGAGGCCCACTGCCACCAATCTACGGAGTTCCGTACGCCTCTCCTCCACCACCACCCTTCTATTAA 2514 55.73 MNPKSHLNPLFHFSLLLLLLLLRLSAALPSVGHGSLSDAEALFIRHRQLLYYRDEWGDRGEQLTVDPSLIFENERIRNAYIALQAWKLAILSDPLNQTANWVGSNVCSYFGVFCAPALDNPKIRTVAGIDLNHGDIAGYLPEELGLLTDLALFHINSNRFCGTLPHKFDRLKLLYELDLSNNRFAGKFPDVVLRLPTLKFLDLRFNEFEGNVPRELFDKDLDAIFINHNRFRFELPDNFGNSPVSVIVLANNKFHGCVPSSLGNMTRLNEIILMNNGLNSCLPPEIGALKNLTVFDVSSNDLVGPLPESFGGLVSLEQLNVANNFLSGKIPESICKLPKLQNFTFSNNFFSGEPPVCLRLPDFSDRRNCLAGRPGQRSTVQCRTFLSRPVDCNAFKCGGSSSGSPSTPFTPPVVSPSSPPSPSGAASPSSPSHSPNAPPAPPLSPHFPPLSPQSPPSPPSSPSTPSQPSTPSSPSSPSTPSQPSTPPSPSSPSTPSQPSTPPSPSSPSTPSTPSTPPHFPSPSAPSPSSPPRGHAPPSLPSPSSPPQGHTPPSEPSPSSPPHGHTPPGPPSSEPSPPSPSQGHNPSAPPTSEPSPPLPPQGHTPPAPPSPSEPSPSSPPHVNTPAIPPSPSEPSPSSPPQGHVPPAEPSPPGTASPPAPPFPVYTPPPPQFPDFPSPPSTQPPVYCPRSPYPPSPPSYSPNPPLNHPNSPPPPPLPVYPPPPPVHTTPSPLPLPCIQPPPPNVKYSGPPPPPPTPSSPIHYNPPPPPVHYQAPPSPSPPVRVYPPPSPTPPPPVVYESPPPPVVYQSPPPPPTPVYGGPLPPIYGVPYASPPPPPFY 837
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 20694770 20697283 + CmPI595203_06g010760.1 Cmu06g1076 418736
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu06g1076 837 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 16 522 IPR051582 -
Cmu06g1076 837 FunFam Leucine-rich repeat extensin-like protein 5 242 381 - -
Cmu06g1076 837 Pfam Leucine Rich Repeat 174 191 IPR001611 GO:0005515(InterPro)
Cmu06g1076 837 Pfam Leucine rich repeat N-terminal domain 82 114 IPR013210 -
Cmu06g1076 837 SUPERFAMILY L domain-like 88 361 - -
Cmu06g1076 837 Gene3D Ribonuclease Inhibitor 242 363 IPR032675 -
Cmu06g1076 837 MobiDBLite consensus disorder prediction 409 816 - -
Cmu06g1076 837 FunFam Leucine-rich repeat extensin-like protein 1 80 241 - -
Cmu06g1076 837 Gene3D Ribonuclease Inhibitor 79 241 IPR032675 -
Cmu06g1076 837 Pfam Leucine rich repeat 291 348 IPR001611 GO:0005515(InterPro)
Cmu06g1076 837 MobiDBLite consensus disorder prediction 399 816 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu06g0349 Cmu-Chr6:4039723 Cmu06g1076 Cmu-Chr6:20694770 6.20E-40 dispersed
Cmu06g0350 Cmu-Chr6:4043390 Cmu06g1076 Cmu-Chr6:20694770 1.10E-38 dispersed
Cmu06g1076 Cmu-Chr6:20694770 Cmu11g0193 Cmu-Chr11:2404299 6.80E-14 dispersed
Cmu07g0291 Cmu-Chr7:2924466 Cmu06g1076 Cmu-Chr6:20694770 2.40E-33 transposed
Cmu11g0242 Cmu-Chr11:2917300 Cmu06g1076 Cmu-Chr6:20694770 7.00E-74 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu06g1076 - - - 0.0