Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu06g1097 ATGGCTGCAGTTTTTTACTTTACCACCCGTCTCCAATTTTTCCTAATTTCATTTTCCCTGCTTCTTCTTCTTCTTCATCTTCATTCTGTCCAGTCTGAGCCCACCGCCGACAAGGCAGCTCTTCTCGATTTCTTGAACAAAACCCCTCATGAGAGTCGCCTTCAATGGAATGCTTCCGCCTCTGCCTGTACTTGGGTTGGAGTTGTCTGTGATGCGACTCAGTCGTTTGTTTTTGCTCTCCGGTTGCCTGGCGTGGGGCTTGTCGGTCCGATTCCGGTTAATACGCTAGGTCGGTTGAATCGGCTCCGAGTTCTCAGTCTCCGGTCGAATAGAATCTCTGGGGAGTTGCCGGCGGATTTTTCTAATTTGGGATTTCTTCGTAGTCTTTATCTTCAGGACAACGAGCTTTCCGGGGATTTTCCGGTGAGTGTGACTCAGTTGACTCGGTTGACTCGACTTGATCTCTCGTCCAACAATTTCTCTGGTTCGATTCCGTTTTCGGTGAATAATCTGACCCATTTGACTGGGCTTTTCTTGGAGAATAATGGGTTTTCGGGTTCTCTGCCGAGTATTCCTGCGGCTGCGACTAGTCTCACGGGATTCAATGTATCGAATAATAAGCTCAATGGATCCATTCCCGAAACCTTATCGAAATTCTCTGCTTCATCTTTCGCCGGAAATTTAGCGCTCTGCGGTGGTCCATTGCCGTCGTGCAACCCGTTTTTTCCCTCCCCTGCTCCATCGCCGACGTCAGCCGTGAAACCCCCACAAGTTCCCGTCGAGAAGAAGTCGAAAAAGCTCTCCATCGCTGCCATTGTCGGAATTGTCGTCGGCGCCGCTTTCTTTGCGTTTATATTGCTGTTTTTGCTCCTGTTTTGTCTCCGGAAGCGCGAGCGGGGGCAGCCGGCGAAGCCGCCGACTACGGTGGTTACTACTCGATCTGTTCCGGCGGAGGCAGGTACATCGTCTTCGAAAGACGACATCACCGGGGGATCAGTGGAGACAGAGAAAAACAGATTAGTGTTCTTCGAAGGTGGAGTTTACAGCTTCGATTTGGAGGACTTGTTGAGAGCTTCGGCGGAGGTTTTAGGAAAAGGAAGCGTCGGGACGTCGTACAAGGCGGTGCTGGAAGAAGGAACCACCGTGGTAGTGAAGAGATTGAAAGATGTGGTGATGACGAAGAAGGAATTCGAAACGCAAATGGAAGCTCTGGGAAATGTGAAACATGAAAATGTGGTTCCTCTCAGAGCTTTCTACTTTTCCAGAGATGAGAAATTGCTTGTTTCCGATTACATGGCCGCCGGCAGCCTTTCTTCTTCCCTTCACGGAAGCAGAGGATCCGGCCGTACGCCACTTGATTGGGACAACCGGATGAAAATAGCATTAAGCGCAGCAAGAGGATTGGCTCACCTCCACGTGTCGGGAAAGCTCGTCCATGGCAATATCAAATCGTCGAACATCCTCCTCCGCCCCAACCACGACGCCGCCGTCTCCGACTTCGGTTTGAACCCTCTCTTCGGCGCTTCGACGCCGCCCAACCGGATCGCCGGGTATCGCGCGCCGGAGGTTGTTGAAACCCGAAAGGTCACTTTCAAGTCCGACGTGTACAGTTTTGGCGTGTTGTTGTTGGAGCTTCTCACCGGGAAATCACCAAATCAAGCGTCGTTGGGTGAAGAAGGGATTGATCTTCCGCGGTGGGTCCAGTCGGTGGTCAGAGAGGAATGGACGGCGGAGGTTTTTGATGTGGAGTTAATGAGGTACCACAATATCGAAGAAGAGATGGTTCAGCTTTTACAAATTGCCATGGCCTGCGTCGCCACCGTGCCGGACCAGCGGCCGTCGATGCAGGAGGTGGTTCGTATGATTGAGGATTTGAACCGGGTGGAGACCGACGAGGGATTACGGCAGTCGTCCGATGACCCATCTAAAGGATCGGACGGCCAGACGCCGCCGCAAGAGTCCAGAACCACCCCACACGGAGCTGGCGGACCACCGTAG 1998 52.35 MAAVFYFTTRLQFFLISFSLLLLLLHLHSVQSEPTADKAALLDFLNKTPHESRLQWNASASACTWVGVVCDATQSFVFALRLPGVGLVGPIPVNTLGRLNRLRVLSLRSNRISGELPADFSNLGFLRSLYLQDNELSGDFPVSVTQLTRLTRLDLSSNNFSGSIPFSVNNLTHLTGLFLENNGFSGSLPSIPAAATSLTGFNVSNNKLNGSIPETLSKFSASSFAGNLALCGGPLPSCNPFFPSPAPSPTSAVKPPQVPVEKKSKKLSIAAIVGIVVGAAFFAFILLFLLLFCLRKRERGQPAKPPTTVVTTRSVPAEAGTSSSKDDITGGSVETEKNRLVFFEGGVYSFDLEDLLRASAEVLGKGSVGTSYKAVLEEGTTVVVKRLKDVVMTKKEFETQMEALGNVKHENVVPLRAFYFSRDEKLLVSDYMAAGSLSSSLHGSRGSGRTPLDWDNRMKIALSAARGLAHLHVSGKLVHGNIKSSNILLRPNHDAAVSDFGLNPLFGASTPPNRIAGYRAPEVVETRKVTFKSDVYSFGVLLLELLTGKSPNQASLGEEGIDLPRWVQSVVREEWTAEVFDVELMRYHNIEEEMVQLLQIAMACVATVPDQRPSMQEVVRMIEDLNRVETDEGLRQSSDDPSKGSDGQTPPQESRTTPHGAGGPP 665
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 21316965 21319393 + CmPI595203_06g010970.1 Cmu06g1097 418757
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu06g1097 665 SUPERFAMILY L domain-like 56 219 - -
Cmu06g1097 665 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 432 636 - -
Cmu06g1097 665 Pfam Leucine Rich Repeat 197 218 IPR001611 GO:0005515(InterPro)
Cmu06g1097 665 Pfam Leucine Rich Repeat 101 123 IPR001611 GO:0005515(InterPro)
Cmu06g1097 665 Pfam Leucine Rich Repeat 149 171 IPR001611 GO:0005515(InterPro)
Cmu06g1097 665 Gene3D Phosphorylase Kinase; domain 1 325 431 - -
Cmu06g1097 665 Pfam Protein tyrosine and serine/threonine kinase 361 621 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu06g1097 665 Gene3D Ribonuclease Inhibitor 192 241 IPR032675 -
Cmu06g1097 665 MobiDBLite consensus disorder prediction 300 331 - -
Cmu06g1097 665 Pfam Leucine rich repeat N-terminal domain 36 71 IPR013210 -
Cmu06g1097 665 Gene3D Ribonuclease Inhibitor 35 191 IPR032675 -
Cmu06g1097 665 MobiDBLite consensus disorder prediction 626 665 - -
Cmu06g1097 665 PANTHER OS05G0588300 PROTEIN 18 632 IPR050994 -
Cmu06g1097 665 MobiDBLite consensus disorder prediction 305 329 - -
Cmu06g1097 665 MobiDBLite consensus disorder prediction 640 656 - -
Cmu06g1097 665 SUPERFAMILY Protein kinase-like (PK-like) 361 622 IPR011009 -
Cmu06g1097 665 Gene3D Transferase(Phosphotransferase) domain 1 432 644 - -
Cmu06g1097 665 FunFam Probable inactive receptor kinase RLK902 34 192 - -
Cmu06g1097 665 ProSiteProfiles Protein kinase domain profile. 357 625 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu06g1097 665 FunFam pollen receptor-like kinase 1 327 431 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu06g1097 Cmu-Chr6:21316965 Cmu10g2669 Cmu-Chr10:33492269 3.20E-91 dispersed
Cmu11g0257 Cmu-Chr11:3111452 Cmu06g1097 Cmu-Chr6:21316965 8.60E-222 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75611 PF00069 Pkinase 5.90E-37 CL0016 Cmu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu06g1097 - - - 0.0