Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu06g1102 ATGCCCTACATGCAAATGGAGCCAGAAGAGAAACATGTGATTCCATCTTCTCAAATGGCGTTGAAATCCCACCATGGATCAAATGATGGTGAGAAAACTAATTTATGGAAAAGGAAAGGAAGAAGGAGAGCAAAAGGACCTTCCATGGAAGGTTTGAAGCAAAAGGAACTTGATCGAAACCTGGAGTTTCCCTCTTCTTCTTGCAAAAGCGTAACATTTCCAAGAAGGCCAGACTTCGGCCAGCTGGGGACTAAATGCTTGGTTAAAGCCAACCACTTCCTAGCAAAAATACCTGAATCAGACATAAGCCATTATAATGTTAAGATAACCCCAGAAGTTACTTCTCGTAAAATGAAGAAGAATATAATGACCGAGTTGGTCAAACATTACAGAAGCACAGAGCTGGGGATGCGACTGCCAGTTTATGATGGAGGAAGCAACCTGTACACAGCCGGATTGCTGCCTTTCATATCAAAAGAGTTCACTGTCATTTTGGCTAATGAAGAAGAGGGGGCAGCCACTCCCAGGGAACGAGAATTTAAAGTGCAGATAAAGTTTGTAACTTTGGCTAGCATGCACCAGTTACGAGAATTACTCGATGGCAAACAAGTTAATAACCCTCAAGAAGCTTTGACCATAATTGACATCGTCTTGAGGGAGCTCCATGCTCAAAGATATATATCAGTTGGGCGATCCTTTTATTCTCCTTGTATTAAGAAGCCTCAGCAGATTGGGGGCGGTTTGCAAGCATGGCGTGGTTTCTATCAAAGCATCCGACCTACTCAAATGGGATTGTCACTAAATATTGACATGTCATCCACTGCATTCATTGAAGCAATCCCTGTCATTGATTTTGTCGCTCAAATTTTAAACAAAGACGTGTACTCAAGAACATTGTCTGATGCTGATCGTATTAAGGTCAAAAAAGTACTTAGAGGTGTAAAAGTTGAAGTTACACACCGAGGAAATGTACGAAGGAAATATCGAATTTCAGGGCTAACATCACAGCCTACAAGAGAGCTAATTTTCCCTCTTGATGAGCAGATGAACATGAAATCTGTAGTTGAATACTTCCAAGAGATGTATGGATATACCATTCAGTATACACATTTGCCTTGCCTTCAAGTAGGAAACCAGAAGAAGGTGAATTATCTACCTATGGAGGCGTGTAAGATACTCAAAGGACAGAGATACACAAAAGGATTGAATGAAAAGCAAATAACTTCCTTGTTGAAGGTTTCATGCCAAAGACCCTCTGATCAGGAAATGGACATTATTCAGACTGTTCATGAGAATGCATATGAGGCAGATCCATATGCAAAAGAATTTGGAATCAATATCGACAACAAGCTTACATCAGTTGAAGCACGAGTCCTTCCATCTCCATGGCTAAAATTTCATGACACTGGAAAAGAAAAGGAACATCAGCCTCAAGTTGGTCAGTGGAATATGATGAATAAGAAAGTAATAGATGGAAGTGTTGTAAGATACTGGGCTTGCATAAATTTCTCACGCAATGTCCAAGAGAACATCGCTCGTGGTTTCTGTCAACAGCTGGTCCAGATGTGCCAAATCTCTGGCATGGAATTTAACCCAGATCCTGCAACTCCTATATACTCAGCAAGACCAGAGCAAGTGAAGAAGGCCTTAAAATTTGTATGTGGTGCAGTTTATAACAAACATGAAGGGAAAGAGTTAGATTTGCTGATAGCTATTCTTCCTGACAACAACGGCTCATTATATGGTGATCTTAAAAGGATCTGTGAAACAGAGTTGGGATTGATATCCCAGTGTTGTCTAACAAAGCACGTCTTCAAGAAGAGCAGACAGTACCTGGCAAATGTGTCACTTAAGATCAACGTCAAGATGGGTGGAAGAAACACTGTTCTTTTAGATGCTTTGCGGTCAAGAATTCCACTAGTCAGTGACATACCAACGATAATCTTCGGAGCTGATGTCACCCATCCAGAATCTGGAGAGGATTCTCTTCCATCAATTGCGGCTGTTGTGGCTTCCCAAGATTGGCCAGAGGTTACAAAATATGCTGGATTGGTATGTGCTCAGCCACACCGGGAGGAACTGATTCAAGATTTATTCAAAACATGGAAAGATCCTCACCGGGGCACGGTTGCCGGGGGTATGATAAGGGAGCTCTTGCTTTCATTCAAGAAGGCCACTGGACAAAAACCATTAAGGATTATATTCTACAGGGATGGGGTCAGTGAGGGTCAGTTCTACCAGGTTCTACTGCACGAACTCGATGCCATACGCAAGGCTTGTGCTTCACTAGAACCCAGTTACCAACCTCCAGTAACTTTTATCATTGTCCAAAAGCGACACCATACCAGACTTTTTGCATCCAATCACAATGATAGGAGTAGCGCTGACAAGAGTGGTAATATTTTACCAGGTACTGTCGTGGATTCAAAGATATGTCATCCAACTGAGTTCGACTTTTATCTATGCAGTCACGCAGGAATCCAGGGAACAAGTCGTCCTGCACACTATCACGTTCTTTGGGATGAGAACAATTTCAGTGCAGATGAAATCCAATCTCTGACTAATAACCTCTGTTACACGTATGCTCGGTGCACAAGATCAGTCTCAGTAGTGCCTCCAGCATACTACGCTCATTTGGCCGCATACAGAGCTCGATTCTACGTAGACCCCGACGCACAGGAGAATGCCAAAAGATGCTGCACTCGAACCACAAATGGATCCTGCGTCCGGCCTCTGCCTGCGCTGAAAGAGAGAGTGAAAAATGTAATGTTCTATTGCTGA 2781 42.65 MPYMQMEPEEKHVIPSSQMALKSHHGSNDGEKTNLWKRKGRRRAKGPSMEGLKQKELDRNLEFPSSSCKSVTFPRRPDFGQLGTKCLVKANHFLAKIPESDISHYNVKITPEVTSRKMKKNIMTELVKHYRSTELGMRLPVYDGGSNLYTAGLLPFISKEFTVILANEEEGAATPREREFKVQIKFVTLASMHQLRELLDGKQVNNPQEALTIIDIVLRELHAQRYISVGRSFYSPCIKKPQQIGGGLQAWRGFYQSIRPTQMGLSLNIDMSSTAFIEAIPVIDFVAQILNKDVYSRTLSDADRIKVKKVLRGVKVEVTHRGNVRRKYRISGLTSQPTRELIFPLDEQMNMKSVVEYFQEMYGYTIQYTHLPCLQVGNQKKVNYLPMEACKILKGQRYTKGLNEKQITSLLKVSCQRPSDQEMDIIQTVHENAYEADPYAKEFGINIDNKLTSVEARVLPSPWLKFHDTGKEKEHQPQVGQWNMMNKKVIDGSVVRYWACINFSRNVQENIARGFCQQLVQMCQISGMEFNPDPATPIYSARPEQVKKALKFVCGAVYNKHEGKELDLLIAILPDNNGSLYGDLKRICETELGLISQCCLTKHVFKKSRQYLANVSLKINVKMGGRNTVLLDALRSRIPLVSDIPTIIFGADVTHPESGEDSLPSIAAVVASQDWPEVTKYAGLVCAQPHREELIQDLFKTWKDPHRGTVAGGMIRELLLSFKKATGQKPLRIIFYRDGVSEGQFYQVLLHELDAIRKACASLEPSYQPPVTFIIVQKRHHTRLFASNHNDRSSADKSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFSADEIQSLTNNLCYTYARCTRSVSVVPPAYYAHLAAYRARFYVDPDAQENAKRCCTRTTNGSCVRPLPALKERVKNVMFYC 926
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 21445322 21450579 + CmPI595203_06g011020.1 Cmu06g1102 418762
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu06g1102 926 Gene3D - 637 926 IPR036397 GO:0003676(InterPro)
Cmu06g1102 926 Pfam Piwi domain 569 887 IPR003165 GO:0003676(InterPro)
Cmu06g1102 926 FunFam Argonaute 10 458 631 - -
Cmu06g1102 926 FunFam protein argonaute 10-like 637 926 - -
Cmu06g1102 926 Pfam Argonaute linker 2 domain 423 466 IPR032472 -
Cmu06g1102 926 SMART Piwi_a_2 568 889 IPR003165 GO:0003676(InterPro)
Cmu06g1102 926 Pfam N-terminal domain of argonaute 85 218 IPR032474 -
Cmu06g1102 926 Pfam PAZ domain 284 410 IPR003100 GO:0003723(InterPro)|GO:0005515(InterPro)
Cmu06g1102 926 ProSiteProfiles Piwi domain profile. 568 889 IPR003165 GO:0003676(InterPro)
Cmu06g1102 926 Pfam Mid domain of argonaute 477 552 IPR032473 -
Cmu06g1102 926 FunFam Protein argonaute-2 273 399 - -
Cmu06g1102 926 Pfam Argonaute linker 1 domain 228 278 IPR014811 -
Cmu06g1102 926 CDD Piwi_ago-like 438 887 IPR045246 -
Cmu06g1102 926 MobiDBLite consensus disorder prediction 1 51 - -
Cmu06g1102 926 SUPERFAMILY Ribonuclease H-like 560 889 IPR012337 -
Cmu06g1102 926 Gene3D paz domain 273 398 - -
Cmu06g1102 926 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 76 895 - GO:0003723(PANTHER)|GO:0004521(PANTHER)|GO:0005737(PANTHER)|GO:0035194(PANTHER)
Cmu06g1102 926 CDD PAZ_argonaute_like 279 393 - -
Cmu06g1102 926 SMART PAZ_2_a_3 284 416 IPR003100 GO:0003723(InterPro)|GO:0005515(InterPro)
Cmu06g1102 926 Gene3D - 458 631 - -
Cmu06g1102 926 ProSiteProfiles PAZ domain profile. 281 394 IPR003100 GO:0003723(InterPro)|GO:0005515(InterPro)
Cmu06g1102 926 SMART DUF1785_2 227 279 IPR014811 -
Cmu06g1102 926 SUPERFAMILY PAZ domain 274 433 IPR036085 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu05g0521 Cmu-Chr5:4438214 Cmu06g1102 Cmu-Chr6:21445322 0.00E+00 dispersed
Cmu05g2452 Cmu-Chr5:33539421 Cmu06g1102 Cmu-Chr6:21445322 1.10E-167 dispersed
Cmu06g1102 Cmu-Chr6:21445322 Cmu09g1063 Cmu-Chr9:10841563 1.20E-133 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu06g1102 K11593 - csv:101213206 1806.57