Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu06g1122 ATGGAGTTACCTTCTTCAATGTACTCATCATCAAGTGCTTCAGATTCTTCCTCAAGTTGTGCATCTTGCTCATCACATTCGTCTTTTGAATCAACATTGGAGCTCTTGGCCTTCGCTCTTTTGGCAACCACAAACTTCCCTTTTGGTTCACTTCTATTCACAAAACCATCCTTGTTCCCAGGATTTGTGCTCTTTCCATCGAAATCTCCATCTATTGATAATATTCAGCCACACTTTTTGTTCCTTGCCTCAAAGCTTCCTTCTTCTCTCGGATTTGAGATAATGATACCAATTTCCAGCATGAGGCCGAGTGAAGGTCTGGGTGGCGCTAGTGACTACTGCAACTGTGTGTTGGCTAGGTTGTGCTGGGCTGCTACTATTGTGACTCTGACAGATTGCTACTATGTGCTGCTGGCACGAAGATGGAAGATTAGGGTGGAGGCTGATGGTTGTGGTCAAAACTCCACTCCGAATCTGTCCTCGATTTCAGGCTGTGAAAGCTTCGGGTTTTTGGGAAGAAGATACCCAATGAAAGGGGAAGTACAATTGGAGTCATCAATTGGCCAAAACCCTAGTGACTCTGATCCTCTTCTTGAGAATCAGACCGATTCATCATCCCATGGAACCTCTGATGAAATCAAGGATGAGGATACTGAAGCTGGTTCCATTCCTTGTTGTCGTATTTGCTTAGAGAGCGATGCCGAACCAGAAGATGAACTGATTTCTCCATGCATGTGCAAAGGCACACAGCAGTTTGTCCATCGATCTTGTCTTGATCATTGGCGCTCCGTTAAGGAAGGGTTTGCTTTCTCGCATTGCACAACATGCAAAGCCCAATTTCACCTGAAAGTTTCCTTATTTGAGGAAAACTCTTGGCGTAAAGTTAAATTCAGGCTTTTTGTGGCAAGAGATGTTCTCCTTGTATTTATAGCTGTACAAACTTTAATAGCGGCAATGGGTGGTTATGCGTATATAATGGACAAAGATGGGGCATTTAGGAATTCTTTCAGTGATGGATGGGATCGTATTCTGTCCAAACATCCTATTCCATTTTATTATTGTATCGGGGTCCTAGCCTTCTTTGTTCTGCTCGGATTCTTCGGGCTCATACTGCATTGTTCCTCCCTTAATAGTAATGATCCAAGAGTTGCTGGGTGTCACAACTGTTGCTATGGATGGGGAATATTGGATTGTTTCCCTGCATCTATGGAAGCCTGCTTTGCACTTGTTATCGTTTTCGTGGTTATCTTTGTAATTCTTGGCATAGCTTATGGTTTCCTTGCTGCTACAATGGCTATTCAAAGGATCTGGCAAAGGCATTACCACATTCTCACAAAAAGGGAACTGACTAAAGAATATGTGGTGGAGGATCTTCATGGATGTTATACTCCTCCAAAATTGGAACCAGAACATGAACAACACTTGAAAATGCTACAGCTTCTGTAA 1446 43.02 MELPSSMYSSSSASDSSSSCASCSSHSSFESTLELLAFALLATTNFPFGSLLFTKPSLFPGFVLFPSKSPSIDNIQPHFLFLASKLPSSLGFEIMIPISSMRPSEGLGGASDYCNCVLARLCWAATIVTLTDCYYVLLARRWKIRVEADGCGQNSTPNLSSISGCESFGFLGRRYPMKGEVQLESSIGQNPSDSDPLLENQTDSSSHGTSDEIKDEDTEAGSIPCCRICLESDAEPEDELISPCMCKGTQQFVHRSCLDHWRSVKEGFAFSHCTTCKAQFHLKVSLFEENSWRKVKFRLFVARDVLLVFIAVQTLIAAMGGYAYIMDKDGAFRNSFSDGWDRILSKHPIPFYYCIGVLAFFVLLGFFGLILHCSSLNSNDPRVAGCHNCCYGWGILDCFPASMEACFALVIVFVVIFVILGIAYGFLAATMAIQRIWQRHYHILTKRELTKEYVVEDLHGCYTPPKLEPEHEQHLKMLQLL 481
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 21889486 21898898 + CmPI595203_06g011220.1 Cmu06g1122 418782
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu06g1122 481 SUPERFAMILY RING/U-box 224 281 - -
Cmu06g1122 481 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 187 480 - -
Cmu06g1122 481 SMART ringv_2 225 277 IPR011016 GO:0008270(InterPro)
Cmu06g1122 481 Pfam RING-variant domain 226 276 IPR011016 GO:0008270(InterPro)
Cmu06g1122 481 CDD RING_CH-C4HC3_MARCH 226 277 - -
Cmu06g1122 481 ProSiteProfiles Zinc finger RING-CH-type profile. 218 283 IPR011016 GO:0008270(InterPro)
Cmu06g1122 481 MobiDBLite consensus disorder prediction 184 218 - -
Cmu06g1122 481 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 209 290 IPR013083 -
Cmu06g1122 481 MobiDBLite consensus disorder prediction 184 207 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g1849 Cmu-Chr1:32100821 Cmu06g1122 Cmu-Chr6:21889486 9.90E-54 dispersed
Cmu06g1122 Cmu-Chr6:21889486 Cmu07g1448 Cmu-Chr7:29585410 3.70E-36 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu06g1122 - - - 0.0