Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu06g1135 ATGGAGGATAAGAAAGCCAACTTAATTGCTCTTTTCTTAATCCTCTTTCTCATCCTTCTCCTCATTCTTGCTCGAGTTTTCCTCCAATTTTCCAAGGCTTTTTTCCTTATTTGCGGGATCAATATTTCCCTCACCGCCGCTATCTTGGTCTACATGCTCATCAGACTACGATACAACCGGAGAAGCAAACAGCTCCAGTCTCAGTTAGTTTCCGAAGGTCGAGAGCTTCGGATCGAGTACAGTTTCTTAAGAAAGGTCGCCGGAGTCCCCACCAAGTTCCGGTACAAAGAGCTCGAGGAAGCCACCGACTATTTCAGAGCGTTGATAGGGCAAGGATCTTCCGGTTCCGTCTTCAAAGGAATCCTCAAAGATGGCACTGCAGTAGCCGTCAAGCGGATCGAGGGCGAGAATCGAGGAGACAAAGAGTTTCGAGCGGAGGTATCCGCCATTGCTAGTGTTCAGCATATAAATCTAGTTCGTCTAATTGGTTACTGTACTAATTCATCTGGACCTCGATTTCTCGTCTATGATTTCGTACCGAATGGATCCTTGGATTGCTGGATTTTCCCCAAAAAACCTAAGCACAACAATCGAAATCGTCCTGGCGGTTGCTTGGCTTGGGATCTGAGATATAGAGTCGCCATTGATGTTGCTAAAGCCCTAGCCTACCTTCACCATGATTGCCGATCGAGAATCTTACACCTCGACGTGAAGCCGGAAAACATCCTCCTCGATGAAAATTACAGAGCAACCGTAACGGATTTCGGATTGTCGAAGCTGATGGGGAAAGATGAGAGCCGAATAATGATATCGATGAGAGGAACGAAGGGGTATTTGGCTCCGGAATGGTTATTGGAGAACGGAATTTCAGAGAAATCGGACGTATACAGCTACGGGATGGTTCTTCTGGAACTAGTCGGAGGTCAGAGAAACGTGAGCGTAGTTGAAAATGGAGAAGACAGATCTAAAAGGAAATGGCAGTATTTTCCTCGAATCGTGAGTGCGAAGATGAGGGAAGGGAAATTAATGGAAGCTGTGGATAAAAGGCTATTGGAAACGGGAACGATTGACGAGAGAGAGGTACAGAAACTGGTTTGTGTGGGTTTGTGGTGTATACAAGAGAAGGCGAAGCTGAGGCCGACGATGGCGACGGTGGTGGATATGCTCGAAGGCCGCGTCCCGGTGGAGGAGCCGCCGGATACTGAAATGTTCGTCGTTGATTTGTTGTCTATTGATGAAGAGATGATGAATAGCCATGAGAGGCCGAAGATTGTTCCATTTGGAGAACGGATGAACGACAGAAATCTTCCTTCGTCTTCGTCGACGACGTGTTCGTACGCTATCTCGGTACTCTCCGCCCGGTGA 1365 47.47 MEDKKANLIALFLILFLILLLILARVFLQFSKAFFLICGINISLTAAILVYMLIRLRYNRRSKQLQSQLVSEGRELRIEYSFLRKVAGVPTKFRYKELEEATDYFRALIGQGSSGSVFKGILKDGTAVAVKRIEGENRGDKEFRAEVSAIASVQHINLVRLIGYCTNSSGPRFLVYDFVPNGSLDCWIFPKKPKHNNRNRPGGCLAWDLRYRVAIDVAKALAYLHHDCRSRILHLDVKPENILLDENYRATVTDFGLSKLMGKDESRIMISMRGTKGYLAPEWLLENGISEKSDVYSYGMVLLELVGGQRNVSVVENGEDRSKRKWQYFPRIVSAKMREGKLMEAVDKRLLETGTIDEREVQKLVCVGLWCIQEKAKLRPTMATVVDMLEGRVPVEEPPDTEMFVVDLLSIDEEMMNSHERPKIVPFGERMNDRNLPSSSSTTCSYAISVLSAR 454
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 22074836 22076200 + CmPI595203_06g011350.1 Cmu06g1135 418795
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu06g1135 454 FunFam Putative receptor-like protein kinase 70 178 - -
Cmu06g1135 454 SMART serkin_6 103 389 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu06g1135 454 ProSitePatterns Serine/Threonine protein kinases active-site signature. 232 244 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu06g1135 454 ProSiteProfiles Protein kinase domain profile. 103 405 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu06g1135 454 SUPERFAMILY Protein kinase-like (PK-like) 85 390 IPR011009 -
Cmu06g1135 454 Pfam Protein kinase domain 108 386 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu06g1135 454 CDD STKc_IRAK 109 391 - -
Cmu06g1135 454 Gene3D Transferase(Phosphotransferase) domain 1 179 400 - -
Cmu06g1135 454 ProSitePatterns Protein kinases ATP-binding region signature. 109 131 IPR017441 GO:0005524(InterPro)
Cmu06g1135 454 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 49 410 - -
Cmu06g1135 454 Gene3D Phosphorylase Kinase; domain 1 66 178 - -
Cmu06g1135 454 FunFam Putative receptor-like protein kinase 179 397 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu06g1135 Cmu-Chr6:22074836 Cmu08g0815 Cmu-Chr8:20423008 1.70E-75 dispersed
Cmu06g1135 Cmu-Chr6:22074836 Cmu08g1274 Cmu-Chr8:25055841 1.40E-85 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75612 PF00069 Pkinase 1.80E-43 CL0016 Cmu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu06g1135 - - - 0.0