Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu06g1171 ATGGCAGAAGAGAAAGAAGGGATTTTGTTCATAATTTTGGGAATTTTAATGATGGGTTTGCGAGTAAATGGTGAGCTGAGAAATGGGTTTTATTCTTTTTCATGTTCAAAAGCAGAGTCTATAGTGAGAAAGACAGTTGAATCGTACTGGAAAACAGATCCTACCATTGCAGCTGGGTTGTTGAGGCTTCATTTTCATGACTGTTTTGTGCAGGGATGTGATGGTTCAGTGTTGATTTCGGGTGGTTTAGCAGAGAGAAATGCTTTGCCAAACCTTGGATTAAGAGGGTTTCAAGTAATAGAAGACGCAAAAGCAGAGCTTGAAGCTGAGTGCCCTGGAGTTGTTTCTTGTGCTGATATTCTTGCTTTGGCTGCTCGTGATGCTGTTGACTTGAGTAATGGGCCAAGTTGGTCAGTGCCCACAGGAAGAAGGGATGGAAGGGTTTCTTCAAAATCCCAAGCCGAAAACTTACCTTCTCCACTCGAGTCCATTGCTGTGCACAAGGAAAAATTTGCACAAAAAGGCCTCGACGAACAAGACCTCGTTACCTTACTCGGAGCACACACGATAGGACAAACGGATTGCCTATTCTTCAGATACCGTCTACACAACTTCACAACAACAGGCAATTCAGATCCAACCATAAACCCATCATTCTTAACAGAGCTAAAAGCACTTTGCCCCAAAGATGGAGATGCAACCAAAAGGGTCGCGTTGGACAAAGACAGCCAATTCAAATTTGACCTTAGTTTCTTCAACAACATTAGAGATGGAAATGGAGTTTTGGAGTCGGACCAAAGGCTTTGGAGTGACGACTCAACCAGAAGCATTCTCCAAAAGTACATCAGCCCCTTAAGAGGACTTTTAGGCCTTAGATTTGACTACAACTTTAGGAAATCAATGATTAAGATGAGTAGCATTGAGGTCAAGACCGGTACGCAAGGAGAGATTAGGAGAAAATGTTCGAGGTTTAATTAG 978 42.64 MAEEKEGILFIILGILMMGLRVNGELRNGFYSFSCSKAESIVRKTVESYWKTDPTIAAGLLRLHFHDCFVQGCDGSVLISGGLAERNALPNLGLRGFQVIEDAKAELEAECPGVVSCADILALAARDAVDLSNGPSWSVPTGRRDGRVSSKSQAENLPSPLESIAVHKEKFAQKGLDEQDLVTLLGAHTIGQTDCLFFRYRLHNFTTTGNSDPTINPSFLTELKALCPKDGDATKRVALDKDSQFKFDLSFFNNIRDGNGVLESDQRLWSDDSTRSILQKYISPLRGLLGLRFDYNFRKSMIKMSSIEVKTGTQGEIRRKCSRFN 325
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 22496087 22499228 - CmPI595203_06g011710.1 Cmu06g1171 418831
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu06g1171 325 Gene3D - 29 325 - -
Cmu06g1171 325 FunFam Peroxidase 158 304 - -
Cmu06g1171 325 ProSitePatterns Peroxidases proximal heme-ligand signature. 180 190 IPR019793 -
Cmu06g1171 325 PRINTS Haem peroxidase superfamily signature 240 255 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cmu06g1171 325 PRINTS Haem peroxidase superfamily signature 57 71 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cmu06g1171 325 PRINTS Haem peroxidase superfamily signature 115 132 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cmu06g1171 325 PRINTS Haem peroxidase superfamily signature 133 145 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cmu06g1171 325 PRINTS Haem peroxidase superfamily signature 180 195 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cmu06g1171 325 ProSiteProfiles Plant heme peroxidase family profile. 25 325 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cmu06g1171 325 Pfam Peroxidase 42 281 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cmu06g1171 325 ProSitePatterns Peroxidases active site signature. 57 68 IPR019794 GO:0004601(InterPro)
Cmu06g1171 325 CDD secretory_peroxidase 25 324 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Cmu06g1171 325 PANTHER PEROXIDASE 25-RELATED 20 321 IPR000823 GO:0004601(InterPro)|GO:0004601(PANTHER)|GO:0006950(PANTHER)|GO:0006979(InterPro)|GO:0009505(PANTHER)|GO:0009506(PANTHER)|GO:0020037(InterPro)
Cmu06g1171 325 FunFam Peroxidase 29 172 - -
Cmu06g1171 325 SUPERFAMILY Heme-dependent peroxidases 26 325 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cmu06g1171 325 PRINTS Plant peroxidase signature 254 271 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cmu06g1171 325 PRINTS Plant peroxidase signature 59 79 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cmu06g1171 325 PRINTS Plant peroxidase signature 114 124 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cmu06g1171 325 PRINTS Plant peroxidase signature 238 253 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cmu06g1171 325 PRINTS Plant peroxidase signature 299 312 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cmu06g1171 325 PRINTS Plant peroxidase signature 95 108 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cmu06g1171 325 PRINTS Plant peroxidase signature 133 148 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cmu06g1171 325 PRINTS Plant peroxidase signature 35 54 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cmu06g1171 325 PRINTS Plant peroxidase signature 179 191 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cmu06g1171 325 Gene3D Peroxidase, domain 2 158 304 - -
Cmu06g1171 325 MobiDBLite consensus disorder prediction 135 156 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu06g0541 Cmu-Chr6:5998525 Cmu06g1171 Cmu-Chr6:22496087 1.60E-62 dispersed
Cmu06g1171 Cmu-Chr6:22496087 Cmu09g1510 Cmu-Chr9:27852788 6.00E-107 dispersed
Cmu06g1171 Cmu-Chr6:22496087 Cmu06g1173 Cmu-Chr6:22515417 9.80E-126 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu06g1171 K00430 - csv:101221881 584.719