Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu06g1175 ATGCCCAAGTTTAAGAAATTTAGAGGCGTTAGGCAACGTCATTGGGGCTCTTGGGTTTCTGAAATTCGACACCCTTTATTGAAGAGAAGGATATGGCTCGGGACGTTTGAGACGGCGGAGGAAGCAGCAAAAGCGTACGACCAAGCTGCGGTTTTGATGAGCGGTCGGAATGCGAAAACCAATTTCCCTACAACTCCTCCCAATGGAGACACCAACAACGTTATTACGACGAACAAGGATTCACCAAAGTGTTTGTCTGAAATATTACAAGCTAAGCTCAAGAAATGTTGTCGTACTCCATCGCCGTCGATGACATGCTTGAGGCTCGACACCGAGAATTCGAATATCGGTGTGTGGCAGAAGCGTGCCGGGCAACGGTCAACATCCAACTGGGTTATGACCGTTGAGCTAGGAAACAAGAAGAGCCATAATAACGACAACGACAATGCAGATTCTCCTATGACGATGGCTGTGGTTGCTTCAGATCATCAGTCTCCGATGGCGGTTGCGGAAGTGGCGGAGATTCCATCCGAGTTGGATGAAGAAGAGAAAATGCTAGCATTGCAAATGGTGGAGGAATTGCTTGACATCAACTCTGATCCTAATGAGCCATTTGAGATTCAACAAGGAAAGGATATTAATTATCTTTAG 651 46.39 MPKFKKFRGVRQRHWGSWVSEIRHPLLKRRIWLGTFETAEEAAKAYDQAAVLMSGRNAKTNFPTTPPNGDTNNVITTNKDSPKCLSEILQAKLKKCCRTPSPSMTCLRLDTENSNIGVWQKRAGQRSTSNWVMTVELGNKKSHNNDNDNADSPMTMAVVASDHQSPMAVAEVAEIPSELDEEEKMLALQMVEELLDINSDPNEPFEIQQGKDINYL 216
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 22567054 22567834 - CmPI595203_06g011750.1 Cmu06g1175 418835
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu06g1175 216 Gene3D AP2/ERF domain 5 65 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu06g1175 216 SMART rav1_2 6 69 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu06g1175 216 CDD AP2 5 65 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu06g1175 216 SUPERFAMILY DNA-binding domain 6 64 IPR016177 GO:0003677(InterPro)
Cmu06g1175 216 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu06g1175 216 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu06g1175 216 FunFam Ethylene-responsive transcription factor 2 5 64 - -
Cmu06g1175 216 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 5 135 IPR050913 -
Cmu06g1175 216 PIRSF PTI6 111 206 IPR017392 GO:0003700(InterPro)
Cmu06g1175 216 PIRSF PTI6 2 123 IPR017392 GO:0003700(InterPro)
Cmu06g1175 216 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu06g1175 216 Pfam AP2 domain 6 50 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu06g1175 Cmu-Chr6:22567054 Cmu07g1247 Cmu-Chr7:27783552 1.30E-44 dispersed
Cmu11g0292 Cmu-Chr11:3444758 Cmu06g1175 Cmu-Chr6:22567054 6.30E-61 wgd
Cmu05g1725 Cmu-Chr5:27415672 Cmu06g1175 Cmu-Chr6:22567054 1.50E-54 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6397 PF00847 AP2 7.20E-12 CL0081 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu06g1175 - - - 0.0