Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu06g1179 ATGCTTCGGTTCGTTGCTTGTCTTGTCATTTCTTTGCCGGACTTCGTCGCCACATTTTTCCGATTCCATATTAACCGCTCTGCTCCTTCTCCGCTTTTCTTTTTCTTAGTTGACAATTATCGCGGAGTTTGTTTTCTTCTGGGAAATGCGATCATGAGGCGACTAACTAGAAAAGTTGGGAAGTATGAGGTGGGGCGGACTGTCGGCGAAGGGACGTTCGCCAAGGTTAAGTTTGCATGTAACACGGAGACGGGGGAGGGTGTGGCCATGAAAATTTTGGCCAAAAGTAGCATTCTCAAGCACAAAATGGTAGAACAGATTAAGAGGGAGATATCAATAATGAAAATTGTCAGGCATCCACATATTGTCCGACTGCACGAGGTGTTGGCTAGCCGGACAAAGATATATATTATTCTTGAGTTTGTCTCTGGAGGTGAACTATATGATAAAATAGTTCTTCAAAAGAAGCTTCCAGAAGCTGAGTCTAGACGATACTTTCAACAACTGATAGATGCAGTTGCTCATTGTCACAGCAAGGGCGTGTACCACAGGGACCTTAAGCCTGAAAACCTTCTTCTTGATGCTGATGGAAATCTGAAGGTTTCTGACTTTGGACTGAGTGCGCTATCGCAACAAGGTGTTGAGCTACTTCACACCACATGTGGAACTCCTAATTATGTTGCACCCGAGGTACTTGGAGGTCAGGGTTATGATGGTGCAGCTGCAGATATATGGTCATGTGGAGTCATCCTCTATGTACTAATGGCTGGATATCTTCCATTTTCAGAGACAGACCTCCCCACCCTAAATATGAAGATAAATGCAGCGGAGTATTCCTGCCCCTATTGGTTTTCATCTGGTGCGAAGTCCTTGATACAGAAGATCCTTGATCCGAATCCTAAAACTCGGATTCAAATTGAAGAAATTAGAAAAGATCCATGGTTCAGAAGAAACTACATTCCTGCTAAACTAGGAGAAGATGAGGAAGTAAACTTAGATGATGTTCGGGCTGTTTTTGATGACATTGAGGAAGAATATGTCGCTGATCAGTCAGAAAAAAGTGATGACGGTCCTTTGATAATGAATGCATTTGAGATGATAACATTGTCTCAAGGATTAAATCTGTCACCATTATTTGACCGGCGACAGGACTATATAAAGCGGCAAACACGTTTTGTTTCTCGTAAACCTGCAAACTTTATAATGTCTAGCATTGAAGCAGTAGCAGAAGCTATGGGTTTAAATGTCTCCACGCGTCATTTCAAGACAAGGTTGGAAAGAAGGACTGGACACAGGGTTGCACAATTTGCTGCTGTGCTGGAGATTTATGAGGTGGCACCGTCGCTTTTTATGGTGGACGTTCGCAAAGCTGCCGGTGACACACTAGAATATCACAAGTTCTACAAGAATTTCTGTGCTAAGCTTGAAAACATAATCTGGAAACCAACTGAAAGTGTGGGGAACTGA 1467 43.01 MLRFVACLVISLPDFVATFFRFHINRSAPSPLFFFLVDNYRGVCFLLGNAIMRRLTRKVGKYEVGRTVGEGTFAKVKFACNTETGEGVAMKILAKSSILKHKMVEQIKREISIMKIVRHPHIVRLHEVLASRTKIYIILEFVSGGELYDKIVLQKKLPEAESRRYFQQLIDAVAHCHSKGVYHRDLKPENLLLDADGNLKVSDFGLSALSQQGVELLHTTCGTPNYVAPEVLGGQGYDGAAADIWSCGVILYVLMAGYLPFSETDLPTLNMKINAAEYSCPYWFSSGAKSLIQKILDPNPKTRIQIEEIRKDPWFRRNYIPAKLGEDEEVNLDDVRAVFDDIEEEYVADQSEKSDDGPLIMNAFEMITLSQGLNLSPLFDRRQDYIKRQTRFVSRKPANFIMSSIEAVAEAMGLNVSTRHFKTRLERRTGHRVAQFAAVLEIYEVAPSLFMVDVRKAAGDTLEYHKFYKNFCAKLENIIWKPTESVGN 488
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 22677409 22682159 - CmPI595203_06g011790.1 Cmu06g1179 418839
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu06g1179 488 FunFam Non-specific serine/threonine protein kinase 355 481 - -
Cmu06g1179 488 Gene3D Transferase(Phosphotransferase) domain 1 142 323 - -
Cmu06g1179 488 Gene3D Phosphorylase Kinase; domain 1 52 141 - -
Cmu06g1179 488 CDD CIPK_C 362 477 - -
Cmu06g1179 488 ProSitePatterns Protein kinases ATP-binding region signature. 68 100 IPR017441 GO:0005524(InterPro)
Cmu06g1179 488 Gene3D Kinase associated domain 1, KA1 355 481 - -
Cmu06g1179 488 SUPERFAMILY Protein kinase-like (PK-like) 59 355 IPR011009 -
Cmu06g1179 488 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 56 466 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Cmu06g1179 488 FunFam Non-specific serine/threonine protein kinase 55 357 - -
Cmu06g1179 488 Pfam Protein kinase domain 62 315 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu06g1179 488 ProSiteProfiles Protein kinase domain profile. 62 315 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu06g1179 488 ProSiteProfiles NAF domain profile. 356 380 IPR018451 GO:0007165(InterPro)
Cmu06g1179 488 FunFam Non-specific serine/threonine protein kinase 53 141 - -
Cmu06g1179 488 Pfam NAF domain 358 416 IPR004041 GO:0007165(InterPro)
Cmu06g1179 488 ProSitePatterns Serine/Threonine protein kinases active-site signature. 181 193 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu06g1179 488 SMART serkin_6 62 315 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu05g0051 Cmu-Chr5:589570 Cmu06g1179 Cmu-Chr6:22677409 5.10E-135 dispersed
Cmu06g1179 Cmu-Chr6:22677409 Cmu06g1287 Cmu-Chr6:24033478 6.00E-111 dispersed
Cmu06g1179 Cmu-Chr6:22677409 Cmu08g1125 Cmu-Chr8:23600914 6.70E-171 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75613 PF00069 Pkinase 1.30E-72 CL0016 Cmu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu06g1179 - - - 0.0