Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu06g1183 ATGGCGGCCAGCTGCATCGATATTGCACCTGAACAACTCTGCTACATCCCTTGCAATTTTTGCAATATTGTTCTTGCGGTGAGTGTTCCATGCAGTAGTTTGTTTGATATTGTGACAGTCCGATGTGGGCACTGCACAAATCTGTGGTCCGTCAATATGGCTGCTGCCTTTCAGTCTCTTTCTTGGCAAGATCTTCAGGTTCCAAATTACAATTTGTATGGTTGTAGTGGAGGAGATTTTCAAGGTGATTTTGGATCATCATCCAAATGTAATAACAGTAATAAGATGGAAATTCGAGCACCCACTACAATTGCAGCAGAGGAGAGGGTTGTGAATCGACCTCCCGAGAAGAGGCAGAGAGTACCTTCTGCATATAATCAGTTCATAAAAGAGGAAATCCAAAGGATCAAGGCAAGTAATCCTGAGATTAGCCACAGGGAAGCTTTCAGTACGGCAGCCAAAAACTGGGCACACTTTCCTCGTATTCACTTTGGTCTGATGTTGGAAACCAACAATCAAGTGAAGCTAGATGATGGTTCTGAGCGTTTAATGACAAGGGCTGCACTATTAAACAAATGA 579 43.18 MAASCIDIAPEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQSLSWQDLQVPNYNLYGCSGGDFQGDFGSSSKCNNSNKMEIRAPTTIAAEERVVNRPPEKRQRVPSAYNQFIKEEIQRIKASNPEISHREAFSTAAKNWAHFPRIHFGLMLETNNQVKLDDGSERLMTRAALLNK 192
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 22736571 22739740 - CmPI595203_06g011830.1 Cmu06g1183 418843

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu06g1183 192 CDD HMG-box_SF 120 156 - -
Cmu06g1183 192 Pfam YABBY protein 9 166 IPR006780 GO:0007275(InterPro)
Cmu06g1183 192 FunFam axial regulator YABBY 5-like 104 162 - -
Cmu06g1183 192 Gene3D High mobility group box domain 105 161 IPR036910 -
Cmu06g1183 192 PANTHER PROTEIN YABBY 6-RELATED 10 175 IPR006780 GO:0005634(PANTHER)|GO:0007275(InterPro)|GO:0045165(PANTHER)
Cmu06g1183 192 SUPERFAMILY HMG-box 108 159 IPR036910 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu06g1183 K25796 - - csv:101215951 364.77
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g2236 Cmu-Chr2:35963406 Cmu06g1183 Cmu-Chr6:22736571 1.10E-46 dispersed
Cmu05g2432 Cmu-Chr5:33413880 Cmu06g1183 Cmu-Chr6:22736571 2.20E-22 dispersed
Cmu05g2594 Cmu-Chr5:34633135 Cmu06g1183 Cmu-Chr6:22736571 2.80E-31 dispersed
Cmu06g1183 Cmu-Chr6:22736571 Cmu10g1134 Cmu-Chr10:3966563 2.40E-39 dispersed
Cmu11g0298 Cmu-Chr11:3502136 Cmu06g1183 Cmu-Chr6:22736571 6.30E-72 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmu05g2416 . 16 154 C2C2-YABBY Transcription Factor Family AT1G69180 56.8 4.3e-38 154.8
Cmu05g2432 . 16 154 C2C2-YABBY Transcription Factor Family AT1G69180 56.8 4.3e-38 154.8
Cmu01g0368 . 100 260 C2C2-YABBY Transcription Factor Family AT2G45190 58.6 2.0e-42 169.1
Cmu02g2236 . 1 174 C2C2-YABBY Transcription Factor Family AT1G08465 65.9 1.1e-54 209.9
Cmu01g0368 . 56 250 C2C2-YABBY Transcription Factor Family AT1G08465 51.8 1.5e-43 172.9
Cmu06g1183 . 6 180 C2C2-YABBY Transcription Factor Family AT1G08465 54.1 2.2e-42 169.1
Cmu10g1134 . 22 192 C2C2-YABBY Transcription Factor Family AT1G08465 53.8 4.2e-41 164.9
Cmu11g0298 . 5 180 C2C2-YABBY Transcription Factor Family AT1G08465 50.3 7.2e-41 164.1
Cmu01g0368 . 67 259 C2C2-YABBY Transcription Factor Family AT4G00180 55.5 4.3e-50 194.9
Cmu10g1134 . 33 192 C2C2-YABBY Transcription Factor Family AT4G00180 54.9 8.5e-38 154.1
Cmu05g2594 . 1 164 C2C2-YABBY Transcription Factor Family AT1G23420 53.1 5.6e-39 158.3
Cmu06g1183 . 8 176 C2C2-YABBY Transcription Factor Family AT2G26580 71.0 1.0e-62 236.5
Cmu11g0298 . 8 171 C2C2-YABBY Transcription Factor Family AT2G26580 71.3 4.3e-61 231.1
Cmu02g2236 . 1 174 C2C2-YABBY Transcription Factor Family AT2G26580 59.2 1.1e-48 189.9
Cmu01g0368 . 58 222 C2C2-YABBY Transcription Factor Family AT2G26580 54.4 6.2e-44 174.1
Cmu10g1134 . 22 192 C2C2-YABBY Transcription Factor Family AT2G26580 50.3 3.2e-40 161.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001272 2 2 3 3 3 2 4 2 2 2 2 2 4 2 2 4 2 2 4 2 2 2 2 2 2 2 2 7 3 1 76
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6398 PF04690 YABBY 9.80E-70 CL0114 Cmu TF