Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cmu06g1183 | ATGGCGGCCAGCTGCATCGATATTGCACCTGAACAACTCTGCTACATCCCTTGCAATTTTTGCAATATTGTTCTTGCGGTGAGTGTTCCATGCAGTAGTTTGTTTGATATTGTGACAGTCCGATGTGGGCACTGCACAAATCTGTGGTCCGTCAATATGGCTGCTGCCTTTCAGTCTCTTTCTTGGCAAGATCTTCAGGTTCCAAATTACAATTTGTATGGTTGTAGTGGAGGAGATTTTCAAGGTGATTTTGGATCATCATCCAAATGTAATAACAGTAATAAGATGGAAATTCGAGCACCCACTACAATTGCAGCAGAGGAGAGGGTTGTGAATCGACCTCCCGAGAAGAGGCAGAGAGTACCTTCTGCATATAATCAGTTCATAAAAGAGGAAATCCAAAGGATCAAGGCAAGTAATCCTGAGATTAGCCACAGGGAAGCTTTCAGTACGGCAGCCAAAAACTGGGCACACTTTCCTCGTATTCACTTTGGTCTGATGTTGGAAACCAACAATCAAGTGAAGCTAGATGATGGTTCTGAGCGTTTAATGACAAGGGCTGCACTATTAAACAAATGA | 579 | 43.18 | MAASCIDIAPEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQSLSWQDLQVPNYNLYGCSGGDFQGDFGSSSKCNNSNKMEIRAPTTIAAEERVVNRPPEKRQRVPSAYNQFIKEEIQRIKASNPEISHREAFSTAAKNWAHFPRIHFGLMLETNNQVKLDDGSERLMTRAALLNK | 192 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 22736571 | 22739740 | - | CmPI595203_06g011830.1 | Cmu06g1183 | 418843 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cmu06g1183 | 192 | CDD | HMG-box_SF | 120 | 156 | - | - | |
| Cmu06g1183 | 192 | Pfam | YABBY protein | 9 | 166 | IPR006780 | GO:0007275(InterPro) | |
| Cmu06g1183 | 192 | FunFam | axial regulator YABBY 5-like | 104 | 162 | - | - | |
| Cmu06g1183 | 192 | Gene3D | High mobility group box domain | 105 | 161 | IPR036910 | - | |
| Cmu06g1183 | 192 | PANTHER | PROTEIN YABBY 6-RELATED | 10 | 175 | IPR006780 | GO:0005634(PANTHER)|GO:0007275(InterPro)|GO:0045165(PANTHER) | |
| Cmu06g1183 | 192 | SUPERFAMILY | HMG-box | 108 | 159 | IPR036910 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cmu02g2236 | Cmu-Chr2:35963406 | Cmu06g1183 | Cmu-Chr6:22736571 | 1.10E-46 | dispersed | |
| Cmu05g2432 | Cmu-Chr5:33413880 | Cmu06g1183 | Cmu-Chr6:22736571 | 2.20E-22 | dispersed | |
| Cmu05g2594 | Cmu-Chr5:34633135 | Cmu06g1183 | Cmu-Chr6:22736571 | 2.80E-31 | dispersed | |
| Cmu06g1183 | Cmu-Chr6:22736571 | Cmu10g1134 | Cmu-Chr10:3966563 | 2.40E-39 | dispersed | |
| Cmu11g0298 | Cmu-Chr11:3502136 | Cmu06g1183 | Cmu-Chr6:22736571 | 6.30E-72 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 6398 | PF04690 | YABBY | 9.80E-70 | CL0114 | Cmu | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cmu06g1183 | K25796 | - | csv:101215951 | 364.77 |