Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu06g1183 ATGGCGGCCAGCTGCATCGATATTGCACCTGAACAACTCTGCTACATCCCTTGCAATTTTTGCAATATTGTTCTTGCGGTGAGTGTTCCATGCAGTAGTTTGTTTGATATTGTGACAGTCCGATGTGGGCACTGCACAAATCTGTGGTCCGTCAATATGGCTGCTGCCTTTCAGTCTCTTTCTTGGCAAGATCTTCAGGTTCCAAATTACAATTTGTATGGTTGTAGTGGAGGAGATTTTCAAGGTGATTTTGGATCATCATCCAAATGTAATAACAGTAATAAGATGGAAATTCGAGCACCCACTACAATTGCAGCAGAGGAGAGGGTTGTGAATCGACCTCCCGAGAAGAGGCAGAGAGTACCTTCTGCATATAATCAGTTCATAAAAGAGGAAATCCAAAGGATCAAGGCAAGTAATCCTGAGATTAGCCACAGGGAAGCTTTCAGTACGGCAGCCAAAAACTGGGCACACTTTCCTCGTATTCACTTTGGTCTGATGTTGGAAACCAACAATCAAGTGAAGCTAGATGATGGTTCTGAGCGTTTAATGACAAGGGCTGCACTATTAAACAAATGA 579 43.18 MAASCIDIAPEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQSLSWQDLQVPNYNLYGCSGGDFQGDFGSSSKCNNSNKMEIRAPTTIAAEERVVNRPPEKRQRVPSAYNQFIKEEIQRIKASNPEISHREAFSTAAKNWAHFPRIHFGLMLETNNQVKLDDGSERLMTRAALLNK 192
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
6 22736571 22739740 - CmPI595203_06g011830.1 Cmu06g1183 418843
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cmu06g1183 192 CDD HMG-box_SF 120 156 - -
Cmu06g1183 192 Pfam YABBY protein 9 166 IPR006780 GO:0007275(InterPro)
Cmu06g1183 192 FunFam axial regulator YABBY 5-like 104 162 - -
Cmu06g1183 192 Gene3D High mobility group box domain 105 161 IPR036910 -
Cmu06g1183 192 PANTHER PROTEIN YABBY 6-RELATED 10 175 IPR006780 GO:0005634(PANTHER)|GO:0007275(InterPro)|GO:0045165(PANTHER)
Cmu06g1183 192 SUPERFAMILY HMG-box 108 159 IPR036910 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g2236 Cmu-Chr2:35963406 Cmu06g1183 Cmu-Chr6:22736571 1.10E-46 dispersed
Cmu05g2432 Cmu-Chr5:33413880 Cmu06g1183 Cmu-Chr6:22736571 2.20E-22 dispersed
Cmu05g2594 Cmu-Chr5:34633135 Cmu06g1183 Cmu-Chr6:22736571 2.80E-31 dispersed
Cmu06g1183 Cmu-Chr6:22736571 Cmu10g1134 Cmu-Chr10:3966563 2.40E-39 dispersed
Cmu11g0298 Cmu-Chr11:3502136 Cmu06g1183 Cmu-Chr6:22736571 6.30E-72 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6398 PF04690 YABBY 9.80E-70 CL0114 Cmu TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu06g1183 K25796 - csv:101215951 364.77