Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu06g1197 ATGGAGAAAAGGTGTGGTTGTTGGGCTGTTTTGACTCGTACTGTTTCTGGTGTTTGCAAATCCTCTGCTTCTAGAGACTCTCCAAACACCATTCCTCGAACTAGCCTAGTTTATGGTTCTGCTACTGAAACACGGTATTTAAATGCTAGCAACAGGGATCTCTGTACCTTGAATGAAGCTGAGCTGGCCTCTGGTAATGCCAATCCATCAGAATCAGATAACAAAACAGCATGCAAACTGCTTCAGTTCTCTTATCATGAGCTCAAGGCAGCAACAGGAAACTTTAGACCTGATAGTATTCTTGGGGAAGGTGGATTTGGATTTGTCTTTAAAGGATGGATTGAAGAGAATGGGACAGCCCCTGCAAAACCTGGATCAGGAATTACGGTAGCTGTTAAGAGCTTGAAACTAGATGGTCTTCAAGGCCACAGAGAATGGGTGGCTGAGGTTGCCTTTCTCGGACAACTTCACCATCCAAATCTTGTTAAGCTTATAGGTTACTGTAACGAAGATGATCTACGTTTGCTTGTTTACGAGTTTATGAGCCGTGGAAGTCTTGAGAACCATCTTTTCAGAAGGACTATACCTCTTCCATGGTCCAATAGGATCAAGATTGCCCTTGGAGCGGCGAAAGGATTGGCCTTTCTTCATAATGGCCCAGTACCTGTAATCTATAGAGATTTTAAGACATCCAATATCTTGCTTGATTCGGATTACAATGCAAAGCTTTCGGATTTTGGTTTTGCGAAAGCAGGGCCTCAAGGAGACAAAACACATGTTTCTACCAGGGTAATTGGGACATATGGCTATGCTGCTCCTGAATATGTAATGACAGGGCATCTGACATCGAAGAATGATGTTTATAGCTTCGGTGTTGTGCTTCTTGAGATCGTAACAGGGAGAAGATCCATGGACAAGAAACGTCCGAGTGGTGAACAAAACCTTGTCTCATGGGCTCGACCATATTTAGCTGATAAAAGAAAGATATATCATATAGTGGATCCCCGCTTGGAATTCAACTATTCCATAAAAGGGGTGCAAAAGGTCTCGCAGCTTGCTTGCAGTTGCCTCAGCAGGGACCCAAAACTACGTCCAACCATGGACGAAGTCGTGAAGATTCTGACTCCACTACAAGATCTCAACGACCTCGCCATCCTAACATCTCACTGCCGCTCATCTTCACAAGGGAGGCGCAAGAAGAAACCCGAAGGCCTAACCTACACCCAAAGCTTCAGAGCTTCTCCATTGAACACTGGAAAGCAGCATGTAACGTGA 1275 44.55 MEKRCGCWAVLTRTVSGVCKSSASRDSPNTIPRTSLVYGSATETRYLNASNRDLCTLNEAELASGNANPSESDNKTACKLLQFSYHELKAATGNFRPDSILGEGGFGFVFKGWIEENGTAPAKPGSGITVAVKSLKLDGLQGHREWVAEVAFLGQLHHPNLVKLIGYCNEDDLRLLVYEFMSRGSLENHLFRRTIPLPWSNRIKIALGAAKGLAFLHNGPVPVIYRDFKTSNILLDSDYNAKLSDFGFAKAGPQGDKTHVSTRVIGTYGYAAPEYVMTGHLTSKNDVYSFGVVLLEIVTGRRSMDKKRPSGEQNLVSWARPYLADKRKIYHIVDPRLEFNYSIKGVQKVSQLACSCLSRDPKLRPTMDEVVKILTPLQDLNDLAILTSHCRSSSQGRRKKKPEGLTYTQSFRASPLNTGKQHVT 424
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 22952043 22955092 - CmPI595203_06g011970.1 Cmu06g1197 418857
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu06g1197 424 FunFam Probable serine/threonine-protein kinase PBL8 181 394 - -
Cmu06g1197 424 PANTHER OS01G0588500 PROTEIN-RELATED 71 378 IPR050823 -
Cmu06g1197 424 Pfam Protein tyrosine and serine/threonine kinase 99 374 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu06g1197 424 Gene3D Transferase(Phosphotransferase) domain 1 181 391 - -
Cmu06g1197 424 CDD STKc_IRAK 101 377 - -
Cmu06g1197 424 ProSitePatterns Serine/Threonine protein kinases active-site signature. 223 235 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu06g1197 424 ProSitePatterns Protein kinases ATP-binding region signature. 101 133 IPR017441 GO:0005524(InterPro)
Cmu06g1197 424 MobiDBLite consensus disorder prediction 407 424 - -
Cmu06g1197 424 SUPERFAMILY Protein kinase-like (PK-like) 78 385 IPR011009 -
Cmu06g1197 424 MobiDBLite consensus disorder prediction 391 424 - -
Cmu06g1197 424 ProSiteProfiles Protein kinase domain profile. 95 378 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu06g1197 424 FunFam Serine/threonine-protein kinase BIK1 62 180 - -
Cmu06g1197 424 Gene3D Phosphorylase Kinase; domain 1 69 180 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu06g1197 Cmu-Chr6:22952043 Cmu09g1763 Cmu-Chr9:33759929 2.00E-139 dispersed
Cmu11g0313 Cmu-Chr11:3677060 Cmu06g1197 Cmu-Chr6:22952043 1.10E-196 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75615 PF00069 Pkinase 4.80E-45 CL0016 Cmu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu06g1197 - - - 0.0