Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu06g1269 ATGTCAGCTATGGGGGACATTTCATTAGAAGATGTCAAGAATGAGAACATTGATCTAGAAAGAATTCCTGTTGAGGAAGTTTTTGAGCAACTAAAATGTACAAAAGAAGGATTGAGTACAGCAGAAGGAGAAAAAAGGCTCCAAATTTTTGGCCCTAATAAGCTTGAAGAGAAGAAAGAGAGCAAAGTTTTGAAGTTTTTGGGGTTTATGTGGAACCCTCTTTCATGGGTCATGGAATCTGCGGCAATCATGGCCATTGTCTTGGCCAATGGAGGGGGGAAACCACCAGATTGGCAAGATTTTGTTGGTATCATTGTCTTGTTGATCATCAACTCTACCATCAGTTTCATTGAAGAGAACAATGCTGGAAATGCAGCTGCTGCTCTCATGGCTGGTCTTGCCCCCAAAACCAAGGTCCTAAGAGATGGAAAATGGAAAGAAGAGGAGGCAGCAATTCTAGTTCCAGGAGATGTGATTAGTGTCAAATTGGGAGATATTATCCCGGCTGATGCACGTCTCTTAGAAGGCGATCCTCTTAAGATTGATCAATCTGCTCTTACAGGTGAATCTTTGCCAGTCACCAAGCATCCTGGTGATGAAGTGTTCTCTGGCTCCACTTGCAAGCAAGGTGAGATTGAGGCCGTAGTTATTGCCACTGGTGTGCATACTTTCTTTGGAAAGGCAGCTCACCTTGTGGATAGCACCAACCAAATTGGTCATTTCCAAAAGGTGTTGACGGCCATTGGAAACTTCTGTATATGCTCGATCGCGATAGGGATGATCATTGAGATCTTGGTAATGTATCCAATCCAGCATAGGGCATACAGAGAGGGAATTGACAACTTGTTGGTGCTCCTCATTGGAGGTATTCCCATTGCAATGCCAACAGTTCTGTCAGTAACAATGGCCATCGGATCGCATCGCCTTTCACAACAAGGTGCCATTACTAAGAGGATGACTGCAATTGAAGAGATGGCTGGGATGGATGTTCTCTGCAGTGACAAGACTGGAACTCTCACCCTCAACAAGCTCACTGTCGACAAGTCCTTGATTGAGGTGTTTGTGCCAAACATGGACAAAGACACTGTTATGTTGTTTGCTGCAAGAGCTTCTAGAGTTGAAAATCAAGATGCCATTGATGCATGTATTGTTGGAATGTTGGGTGACCCTAAAGAGGCAAGAGCAGGAATAACTGAAGTACATTTCTTGCCTTTCAATCCTGTTGATAAACGTACCGCCATTACCTACATTGACAGAGATGGTAACTGGCACAGAAGCAGCAAGGGTGCTCCTGAACAGATAATTGACCTTTGTGAGCTTAAAGGAGAAATAAGAAAGAAAGCTCATGACATTATTGATAACTATGCTAACCGCGGTCTTCGTTCCTTGGCAGTTGGTCGACAGACTGTTAAAGATAAGGACAAGGAAAGTGCTGGAGAACCATGGGAATTTGTTGGTCTCTTGCCCCTATTTGATCCTCCAAGGCATGATAGTGCAGAAACCATTCGCCGAGCTCTTGAACTCGGTGTTAATGTTAAGATGATCACAGGTGACCAACTTGCAATAGGAAAAGAAACTGGTCGAAGGCTCGGCATGGGCACTAACATGTATCCATCATCGTCTTTGCTCGGCCAATGCAAGGATGAGTCAATTGCTTCCATTCCTGTTGATGAACTCATTGAGAAGGCTGATGGGTTTGCAGGAGTCTTCCCTGAACACAAGTATGAGATCGTCAAGAAACTTCAGGAGAGGAATCATATTTGTGGCATGACAGGAGATGGTGTCAATGATGCTCCTGCTCTCAAGAAGGCCGACATCGGTATTGCTGTGGCTGATGCAACCGATGCAGCAAGAAGTGCTTCAGACATTGTCTTGACAGAGCCAGGGCTAAGTGTGATTGTGAGTGCTGTATTGACCAGTAGGGCCATCTTTCAGAGAATGAAGAACTATACTATCTATGCAGTTTCCATTACAATTCGTATTGTGTTGGGATTCATGCTTGTTGCTCTCATCTGGAAGTTCGATTTCTCACCTTTTATGGTCTTGATCATTGCCATCCTAAACGATGGAACCATCATGACCATTTCAAAGGATAGGGTCAAGCCATCACCAGTGCCAGACTCATGGAAACTCAAAGAAATTTTTGCTACTGGTGTTGTCCTTGGAACATACATGGCCCTCATGACCGTCTTTTTCTTTTGGCTTGCCAACGAAACCAACTTCTTCACGAACACATTTGGTGTAAAGCCACTCAAAGATCTTGCTGAGATCAATTCTGCTCTTTATCTTCAAGTGAGCATCATCAGTCAAGCTCTCATCTTTGTCACCAGGTCAAGAAGTTGGTCTTTTGTTGAATGCCCTGGTCTCTTGTTAGTTATTGCCTTCATTGCTGCACAGTTGGTTGCCACTTTAATTGCTGTATTTTCTGAATGGGACTTTGCAAGGATCAGAGGTATTGGATGGGGATGGGCAGGAGCTATCTGGGTATTCAGTATTGTTACTTACTTCCCACTAGATGTTCTCAAATTCGGAATTCGATACGCTCTTAGCGGCAAGGCTTGGGACAACATGCTCGAGAATAAGACGGCGTTTACGACTAAGAAGGATTATGGAAAAGGCGAAAGAGAGGCACAATGGGCAATAGCACAACGTACAATGCACGGACTACAACCACCAGAAACCATATTTCATGAAAAGAGCAACTATGAAGAGCTTTCAGAGATTGCAGAGCAAGCCAAGAAAAGGGCTGAAGTTGCTAGGTTGAGGGAACTTCACACTCTAAAGGGTCATGTGGAGTCAGTAGTGAAGTTGAAGGGATTGGACATTGAGACTATCCAACAACACTACACTGTTTAA 2856 44.01 MSAMGDISLEDVKNENIDLERIPVEEVFEQLKCTKEGLSTAEGEKRLQIFGPNKLEEKKESKVLKFLGFMWNPLSWVMESAAIMAIVLANGGGKPPDWQDFVGIIVLLIINSTISFIEENNAGNAAAALMAGLAPKTKVLRDGKWKEEEAAILVPGDVISVKLGDIIPADARLLEGDPLKIDQSALTGESLPVTKHPGDEVFSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDSTNQIGHFQKVLTAIGNFCICSIAIGMIIEILVMYPIQHRAYREGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDKSLIEVFVPNMDKDTVMLFAARASRVENQDAIDACIVGMLGDPKEARAGITEVHFLPFNPVDKRTAITYIDRDGNWHRSSKGAPEQIIDLCELKGEIRKKAHDIIDNYANRGLRSLAVGRQTVKDKDKESAGEPWEFVGLLPLFDPPRHDSAETIRRALELGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSSLLGQCKDESIASIPVDELIEKADGFAGVFPEHKYEIVKKLQERNHICGMTGDGVNDAPALKKADIGIAVADATDAARSASDIVLTEPGLSVIVSAVLTSRAIFQRMKNYTIYAVSITIRIVLGFMLVALIWKFDFSPFMVLIIAILNDGTIMTISKDRVKPSPVPDSWKLKEIFATGVVLGTYMALMTVFFFWLANETNFFTNTFGVKPLKDLAEINSALYLQVSIISQALIFVTRSRSWSFVECPGLLLVIAFIAAQLVATLIAVFSEWDFARIRGIGWGWAGAIWVFSIVTYFPLDVLKFGIRYALSGKAWDNMLENKTAFTTKKDYGKGEREAQWAIAQRTMHGLQPPETIFHEKSNYEELSEIAEQAKKRAEVARLRELHTLKGHVESVVKLKGLDIETIQQHYTV 951
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 23819356 23824048 - CmPI595203_06g012690.1 Cmu06g1269 418929
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu06g1269 951 SUPERFAMILY Calcium ATPase, transduction domain A 135 232 IPR008250 -
Cmu06g1269 951 FunFam ATPase 4 plasma membrane-type 577 817 - -
Cmu06g1269 951 FunFam Plasma membrane ATPase 135 219 - -
Cmu06g1269 951 SMART Cation_ATPase_N_a_2 18 90 IPR004014 -
Cmu06g1269 951 Gene3D - 135 219 - -
Cmu06g1269 951 Gene3D - 97 817 - -
Cmu06g1269 951 ProSitePatterns E1-E2 ATPases phosphorylation site. 334 340 IPR018303 -
Cmu06g1269 951 Gene3D - 900 951 - -
Cmu06g1269 951 Gene3D - 329 628 IPR023214 -
Cmu06g1269 951 Pfam haloacid dehalogenase-like hydrolase 328 605 - -
Cmu06g1269 951 Gene3D - 344 491 IPR023299 GO:0000166(InterPro)
Cmu06g1269 951 FunFam Plasma membrane ATPase 484 639 - -
Cmu06g1269 951 CDD P-type_ATPase_H 37 843 IPR006534 GO:0008553(InterPro)|GO:0016020(InterPro)|GO:0120029(InterPro)
Cmu06g1269 951 Pfam E1-E2 ATPase 134 311 - -
Cmu06g1269 951 PANTHER CALCIUM-TRANSPORTING ATPASE 20 877 - GO:0005886(PANTHER)|GO:0008553(PANTHER)|GO:0015662(PANTHER)|GO:0016021(PANTHER)|GO:0034220(PANTHER)|GO:0051453(PANTHER)|GO:1902600(PANTHER)
Cmu06g1269 951 SFLD p-type atpase 314 643 IPR044492 -
Cmu06g1269 951 SUPERFAMILY Calcium ATPase, transmembrane domain M 17 849 IPR023298 -
Cmu06g1269 951 Coils Coil 899 922 - -
Cmu06g1269 951 Pfam Cation transporter/ATPase, N-terminus 21 84 IPR004014 -
Cmu06g1269 951 PRINTS P-type cation-transporting ATPase superfamily signature 508 518 - -
Cmu06g1269 951 PRINTS P-type cation-transporting ATPase superfamily signature 332 346 - -
Cmu06g1269 951 PRINTS P-type cation-transporting ATPase superfamily signature 591 610 - -
Cmu06g1269 951 PRINTS P-type cation-transporting ATPase superfamily signature 182 196 - -
Cmu06g1269 951 PRINTS P-type cation-transporting ATPase superfamily signature 486 497 - -
Cmu06g1269 951 PRINTS P-type cation-transporting ATPase superfamily signature 614 626 - -
Cmu06g1269 951 NCBIfam HAD-IC family P-type ATPase 566 678 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Cmu06g1269 951 NCBIfam HAD-IC family P-type ATPase 104 352 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Cmu06g1269 951 SFLD C1.7: P-type atpase like 314 643 - -
Cmu06g1269 951 NCBIfam plasma-membrane proton-efflux P-type ATPase 37 808 IPR006534 GO:0008553(InterPro)|GO:0016020(InterPro)|GO:0120029(InterPro)
Cmu06g1269 951 SUPERFAMILY HAD-like 328 638 IPR036412 -
Cmu06g1269 951 PRINTS H+-transporting ATPase (proton pump) signature 762 783 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Cmu06g1269 951 PRINTS H+-transporting ATPase (proton pump) signature 448 466 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Cmu06g1269 951 PRINTS H+-transporting ATPase (proton pump) signature 622 647 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Cmu06g1269 951 PRINTS H+-transporting ATPase (proton pump) signature 591 607 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Cmu06g1269 951 PRINTS H+-transporting ATPase (proton pump) signature 563 579 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Cmu06g1269 951 FunFam Plasma membrane ATPase 344 491 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu06g1269 Cmu-Chr6:23819356 Cmu07g1222 Cmu-Chr7:27527392 0.00E+00 dispersed
Cmu06g1269 Cmu-Chr6:23819356 Cmu08g1205 Cmu-Chr8:24458733 0.00E+00 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu06g1269 K01535 - csv:101214655 1789.24