Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmu06g1276 | ATGACCGTGGAGGGTCATTCTGTTGCTGCAGTTGGTGATGATGGCGCCACTGATCATTTTCCTATTGGGATGCGAGTTCTTGCTGTCGACGATGACCCTATTTGTCTCAAAGTACTCGAGACTCTCCTTCGTAAATGTCAATATCATGTTACGACGACGAAGCAATCCATTGAGGCTTTGAAGATGTTGAGAGAAAATAGAAACAAATTTGACTTGGTTATCAGTGATGTGAACATGCCTGATATGGACGGTTTCAAGCTTCTTGAATTGGTGGGGCTTGAAATGGACCTACCTGTAATCATGTTATCAGCACATAGTGATACTGAGCTTGTTATGAAGGGGATTGCGCATGGTGCGTGTGACTATCTGTTGAAACCAGTTCGAATCGAGGAGTTGAAAAACATTTGGCAGCATGTGATTCGGAGAAAGAAGCTTGAACCAAAGGCAAAAAACAAGGTCCCTAATCAAGATAAGGTTCGAAATGGAGGCAATGAAGGCGAACAAGGTTTCTCACCAACCAATAATGCAGACAACGCAAAATTCAATAGGAAGCGGAAGGACCAAGATGATGATGAGGACGAAGAAGGAAAGGAGAATGGGCTTGATTGTGACGACCCCTCGAACCAGAAGAAGCCTAGGGTAGTGTGGTCAGTTGAGTTGCACCGGAAGTTTGTTTCAGCGGTTAATCAGTTGGGTCTTGAAAAGGCCGTGCCGAAAAAAATCCTGGATCTGATGAATGTTGAAGGACTTACCAGAGAAAATGTGGCAAGTCATTTGCAGAAATATAGGCTTTACCTGAAAAGAATCAGCAATGTGGCATCCCAACAAGCTAACATGGTTGCTACATTTGGGAGTAAAGATGGCACTTACATGCGCCTCGGTTCACTAGATGGATATGGAGAGTTACATGGCTTTGCAGGATCAGGGCGGCTTCCAAACTCTTCATTATCCTCTTATTCACCTGTTGGGATGCTTGGAAGATTGAACTCCCCGGCTGGAATGAGCCTGCGTGGAATCACTTCTTCTGGACTGATCCAGCAAAGCTCCCAAAATTTGAACTGTGCTATAAATAACCTTGGCAAGCTCCAACCAACTACTATGTTGCCTCCTAACCAAACTACTAATCTACTGCAAGGAATTCCAACGTCACTCGAGATCGGCCAGTTGCAACACAGCAAGTCCACCACTCCCATTGGAGACTTCAATACAATGAATGAGACATCCGGGTTTGGAGTTCCCAACAGTTTTTCTGATACGAGAGCAAATATTGGAAATTCAAACTATTCGGTTTCTCCTGCCCCATTGATGTTACAAGGAACAATGCCGACATATGGAAACCAGACTTCCCTTAGAGTGGATCCGCTAAATGGAGAAACTTTTGACATAGACATTGGCGGTTCAAATTTTTTGGATCCTGATCCTTCTAGTGGAAACTGGCAGGGAGCCGCACAACATTTGTCTAGATTCTCAACAACTTCTTTGACCCCCAATGAAGCTTATTCCAATGATCAATTGCATGCAATGAACTCGAGCATTTCTTCCGGCCCCTCAACGATCGGGAACATCTCGGTTGATTTTTCCTCTAGAAGTGCAGTTTCAGCTCCCTTACTGGATTCAAGAGACGTGCAATGCCAGGGAGGGGTAGTTGGCAGCGTTATGCAAGCTGTGAATACCATGCCAAAGCAGAGATGGGAAGAACATAAGCATGATTACAGTCGAAATGTGCAGCATAATCTTGGTGCAATCAATTCACTAGTTTCTAGCAACGGGACTCTAACCCCATTAAGCCAGAGTTACAATCAGAACGGTCTAGTATGTGACAGAAAGGTCGGTTCATCTTTGATAGTCCCATCAAGTGCTGCTCCACTATCCTTCCCTCAACAAAGTATGGTTGAAAAATTGGGTCTGAACACAAAGACGAATGCGGATGGAAACTACCTTTTGAATCAGACAAAGTCACACGATGGATCAATTCAAGGCAATTTCGAGTCCTTGGATGATATAATGAATTCGATAATGAAACGGGAACAAAATGAAATACCAGAAATGAATGGAGAATTTGGATTTGATCATTTCTCTCTAGGATCATGTGTTTGA | 2097 | 43.73 | MTVEGHSVAAVGDDGATDHFPIGMRVLAVDDDPICLKVLETLLRKCQYHVTTTKQSIEALKMLRENRNKFDLVISDVNMPDMDGFKLLELVGLEMDLPVIMLSAHSDTELVMKGIAHGACDYLLKPVRIEELKNIWQHVIRRKKLEPKAKNKVPNQDKVRNGGNEGEQGFSPTNNADNAKFNRKRKDQDDDEDEEGKENGLDCDDPSNQKKPRVVWSVELHRKFVSAVNQLGLEKAVPKKILDLMNVEGLTRENVASHLQKYRLYLKRISNVASQQANMVATFGSKDGTYMRLGSLDGYGELHGFAGSGRLPNSSLSSYSPVGMLGRLNSPAGMSLRGITSSGLIQQSSQNLNCAINNLGKLQPTTMLPPNQTTNLLQGIPTSLEIGQLQHSKSTTPIGDFNTMNETSGFGVPNSFSDTRANIGNSNYSVSPAPLMLQGTMPTYGNQTSLRVDPLNGETFDIDIGGSNFLDPDPSSGNWQGAAQHLSRFSTTSLTPNEAYSNDQLHAMNSSISSGPSTIGNISVDFSSRSAVSAPLLDSRDVQCQGGVVGSVMQAVNTMPKQRWEEHKHDYSRNVQHNLGAINSLVSSNGTLTPLSQSYNQNGLVCDRKVGSSLIVPSSAAPLSFPQQSMVEKLGLNTKTNADGNYLLNQTKSHDGSIQGNFESLDDIMNSIMKREQNEIPEMNGEFGFDHFSLGSCV | 698 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 23871806 | 23875356 | + | CmPI595203_06g012760.1 | Cmu06g1276 | 418936 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmu06g1276 | 698 | CDD | REC_typeB_ARR-like | 26 | 140 | - | - | |
Cmu06g1276 | 698 | PIRSF | RR_ARR_type-B | 1 | 698 | IPR017053 | GO:0003677(InterPro)|GO:0003700(InterPro)|GO:0009736(InterPro) | |
Cmu06g1276 | 698 | NCBIfam | myb-like DNA-binding domain, SHAQKYF class | 211 | 264 | IPR006447 | GO:0003677(InterPro) | |
Cmu06g1276 | 698 | SMART | REC_2 | 24 | 136 | IPR001789 | GO:0000160(InterPro) | |
Cmu06g1276 | 698 | SUPERFAMILY | CheY-like | 23 | 148 | IPR011006 | - | |
Cmu06g1276 | 698 | Gene3D | - | 207 | 270 | - | - | |
Cmu06g1276 | 698 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 208 | 267 | IPR017930 | - | |
Cmu06g1276 | 698 | FunFam | Two-component response regulator | 207 | 270 | - | - | |
Cmu06g1276 | 698 | MobiDBLite | consensus disorder prediction | 157 | 178 | - | - | |
Cmu06g1276 | 698 | Pfam | Response regulator receiver domain | 26 | 134 | IPR001789 | GO:0000160(InterPro) | |
Cmu06g1276 | 698 | Pfam | Myb-like DNA-binding domain | 213 | 263 | IPR001005 | - | |
Cmu06g1276 | 698 | MobiDBLite | consensus disorder prediction | 147 | 208 | - | - | |
Cmu06g1276 | 698 | Gene3D | - | 24 | 182 | - | - | |
Cmu06g1276 | 698 | ProSiteProfiles | Response regulatory domain profile. | 25 | 140 | IPR001789 | GO:0000160(InterPro) | |
Cmu06g1276 | 698 | PANTHER | TWO-COMPONENT RESPONSE REGULATOR | 24 | 371 | IPR045279 | GO:0009736(InterPro) | |
Cmu06g1276 | 698 | SUPERFAMILY | Homeodomain-like | 209 | 268 | IPR009057 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmu01g0572 | Cmu-Chr1:6149671 | Cmu06g1276 | Cmu-Chr6:23871806 | 1.50E-19 | dispersed | |
Cmu06g0463 | Cmu-Chr6:5224798 | Cmu06g1276 | Cmu-Chr6:23871806 | 1.50E-81 | dispersed | |
Cmu06g1276 | Cmu-Chr6:23871806 | Cmu11g0338 | Cmu-Chr11:3883216 | 8.70E-156 | dispersed | |
Cmu04g0906 | Cmu-Chr4:23557105 | Cmu06g1276 | Cmu-Chr6:23871806 | 9.50E-18 | transposed | |
Cmu04g1247 | Cmu-Chr4:26954695 | Cmu06g1276 | Cmu-Chr6:23871806 | 2.80E-16 | transposed | |
Cmu09g0524 | Cmu-Chr9:4821987 | Cmu06g1276 | Cmu-Chr6:23871806 | 1.30E-13 | transposed | |
Cmu05g1682 | Cmu-Chr5:26887605 | Cmu06g1276 | Cmu-Chr6:23871806 | 3.10E-137 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
6400 | PF00072 | Response_reg | 1.70E-25 | CL0304 | Cmu | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmu06g1276 | K14491 | - | csv:101213687 | 1254.97 |