Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu06g1276 ATGACCGTGGAGGGTCATTCTGTTGCTGCAGTTGGTGATGATGGCGCCACTGATCATTTTCCTATTGGGATGCGAGTTCTTGCTGTCGACGATGACCCTATTTGTCTCAAAGTACTCGAGACTCTCCTTCGTAAATGTCAATATCATGTTACGACGACGAAGCAATCCATTGAGGCTTTGAAGATGTTGAGAGAAAATAGAAACAAATTTGACTTGGTTATCAGTGATGTGAACATGCCTGATATGGACGGTTTCAAGCTTCTTGAATTGGTGGGGCTTGAAATGGACCTACCTGTAATCATGTTATCAGCACATAGTGATACTGAGCTTGTTATGAAGGGGATTGCGCATGGTGCGTGTGACTATCTGTTGAAACCAGTTCGAATCGAGGAGTTGAAAAACATTTGGCAGCATGTGATTCGGAGAAAGAAGCTTGAACCAAAGGCAAAAAACAAGGTCCCTAATCAAGATAAGGTTCGAAATGGAGGCAATGAAGGCGAACAAGGTTTCTCACCAACCAATAATGCAGACAACGCAAAATTCAATAGGAAGCGGAAGGACCAAGATGATGATGAGGACGAAGAAGGAAAGGAGAATGGGCTTGATTGTGACGACCCCTCGAACCAGAAGAAGCCTAGGGTAGTGTGGTCAGTTGAGTTGCACCGGAAGTTTGTTTCAGCGGTTAATCAGTTGGGTCTTGAAAAGGCCGTGCCGAAAAAAATCCTGGATCTGATGAATGTTGAAGGACTTACCAGAGAAAATGTGGCAAGTCATTTGCAGAAATATAGGCTTTACCTGAAAAGAATCAGCAATGTGGCATCCCAACAAGCTAACATGGTTGCTACATTTGGGAGTAAAGATGGCACTTACATGCGCCTCGGTTCACTAGATGGATATGGAGAGTTACATGGCTTTGCAGGATCAGGGCGGCTTCCAAACTCTTCATTATCCTCTTATTCACCTGTTGGGATGCTTGGAAGATTGAACTCCCCGGCTGGAATGAGCCTGCGTGGAATCACTTCTTCTGGACTGATCCAGCAAAGCTCCCAAAATTTGAACTGTGCTATAAATAACCTTGGCAAGCTCCAACCAACTACTATGTTGCCTCCTAACCAAACTACTAATCTACTGCAAGGAATTCCAACGTCACTCGAGATCGGCCAGTTGCAACACAGCAAGTCCACCACTCCCATTGGAGACTTCAATACAATGAATGAGACATCCGGGTTTGGAGTTCCCAACAGTTTTTCTGATACGAGAGCAAATATTGGAAATTCAAACTATTCGGTTTCTCCTGCCCCATTGATGTTACAAGGAACAATGCCGACATATGGAAACCAGACTTCCCTTAGAGTGGATCCGCTAAATGGAGAAACTTTTGACATAGACATTGGCGGTTCAAATTTTTTGGATCCTGATCCTTCTAGTGGAAACTGGCAGGGAGCCGCACAACATTTGTCTAGATTCTCAACAACTTCTTTGACCCCCAATGAAGCTTATTCCAATGATCAATTGCATGCAATGAACTCGAGCATTTCTTCCGGCCCCTCAACGATCGGGAACATCTCGGTTGATTTTTCCTCTAGAAGTGCAGTTTCAGCTCCCTTACTGGATTCAAGAGACGTGCAATGCCAGGGAGGGGTAGTTGGCAGCGTTATGCAAGCTGTGAATACCATGCCAAAGCAGAGATGGGAAGAACATAAGCATGATTACAGTCGAAATGTGCAGCATAATCTTGGTGCAATCAATTCACTAGTTTCTAGCAACGGGACTCTAACCCCATTAAGCCAGAGTTACAATCAGAACGGTCTAGTATGTGACAGAAAGGTCGGTTCATCTTTGATAGTCCCATCAAGTGCTGCTCCACTATCCTTCCCTCAACAAAGTATGGTTGAAAAATTGGGTCTGAACACAAAGACGAATGCGGATGGAAACTACCTTTTGAATCAGACAAAGTCACACGATGGATCAATTCAAGGCAATTTCGAGTCCTTGGATGATATAATGAATTCGATAATGAAACGGGAACAAAATGAAATACCAGAAATGAATGGAGAATTTGGATTTGATCATTTCTCTCTAGGATCATGTGTTTGA 2097 43.73 MTVEGHSVAAVGDDGATDHFPIGMRVLAVDDDPICLKVLETLLRKCQYHVTTTKQSIEALKMLRENRNKFDLVISDVNMPDMDGFKLLELVGLEMDLPVIMLSAHSDTELVMKGIAHGACDYLLKPVRIEELKNIWQHVIRRKKLEPKAKNKVPNQDKVRNGGNEGEQGFSPTNNADNAKFNRKRKDQDDDEDEEGKENGLDCDDPSNQKKPRVVWSVELHRKFVSAVNQLGLEKAVPKKILDLMNVEGLTRENVASHLQKYRLYLKRISNVASQQANMVATFGSKDGTYMRLGSLDGYGELHGFAGSGRLPNSSLSSYSPVGMLGRLNSPAGMSLRGITSSGLIQQSSQNLNCAINNLGKLQPTTMLPPNQTTNLLQGIPTSLEIGQLQHSKSTTPIGDFNTMNETSGFGVPNSFSDTRANIGNSNYSVSPAPLMLQGTMPTYGNQTSLRVDPLNGETFDIDIGGSNFLDPDPSSGNWQGAAQHLSRFSTTSLTPNEAYSNDQLHAMNSSISSGPSTIGNISVDFSSRSAVSAPLLDSRDVQCQGGVVGSVMQAVNTMPKQRWEEHKHDYSRNVQHNLGAINSLVSSNGTLTPLSQSYNQNGLVCDRKVGSSLIVPSSAAPLSFPQQSMVEKLGLNTKTNADGNYLLNQTKSHDGSIQGNFESLDDIMNSIMKREQNEIPEMNGEFGFDHFSLGSCV 698
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 23871806 23875356 + CmPI595203_06g012760.1 Cmu06g1276 418936
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu06g1276 698 CDD REC_typeB_ARR-like 26 140 - -
Cmu06g1276 698 PIRSF RR_ARR_type-B 1 698 IPR017053 GO:0003677(InterPro)|GO:0003700(InterPro)|GO:0009736(InterPro)
Cmu06g1276 698 NCBIfam myb-like DNA-binding domain, SHAQKYF class 211 264 IPR006447 GO:0003677(InterPro)
Cmu06g1276 698 SMART REC_2 24 136 IPR001789 GO:0000160(InterPro)
Cmu06g1276 698 SUPERFAMILY CheY-like 23 148 IPR011006 -
Cmu06g1276 698 Gene3D - 207 270 - -
Cmu06g1276 698 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 208 267 IPR017930 -
Cmu06g1276 698 FunFam Two-component response regulator 207 270 - -
Cmu06g1276 698 MobiDBLite consensus disorder prediction 157 178 - -
Cmu06g1276 698 Pfam Response regulator receiver domain 26 134 IPR001789 GO:0000160(InterPro)
Cmu06g1276 698 Pfam Myb-like DNA-binding domain 213 263 IPR001005 -
Cmu06g1276 698 MobiDBLite consensus disorder prediction 147 208 - -
Cmu06g1276 698 Gene3D - 24 182 - -
Cmu06g1276 698 ProSiteProfiles Response regulatory domain profile. 25 140 IPR001789 GO:0000160(InterPro)
Cmu06g1276 698 PANTHER TWO-COMPONENT RESPONSE REGULATOR 24 371 IPR045279 GO:0009736(InterPro)
Cmu06g1276 698 SUPERFAMILY Homeodomain-like 209 268 IPR009057 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g0572 Cmu-Chr1:6149671 Cmu06g1276 Cmu-Chr6:23871806 1.50E-19 dispersed
Cmu06g0463 Cmu-Chr6:5224798 Cmu06g1276 Cmu-Chr6:23871806 1.50E-81 dispersed
Cmu06g1276 Cmu-Chr6:23871806 Cmu11g0338 Cmu-Chr11:3883216 8.70E-156 dispersed
Cmu04g0906 Cmu-Chr4:23557105 Cmu06g1276 Cmu-Chr6:23871806 9.50E-18 transposed
Cmu04g1247 Cmu-Chr4:26954695 Cmu06g1276 Cmu-Chr6:23871806 2.80E-16 transposed
Cmu09g0524 Cmu-Chr9:4821987 Cmu06g1276 Cmu-Chr6:23871806 1.30E-13 transposed
Cmu05g1682 Cmu-Chr5:26887605 Cmu06g1276 Cmu-Chr6:23871806 3.10E-137 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6400 PF00072 Response_reg 1.70E-25 CL0304 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu06g1276 K14491 - csv:101213687 1254.97