Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu06g1287 ATGGCGGAAAAGGACAGAGACGGTAATTCTGGTGTGCTCCATGGGAAGTATGAGTTAGGTCGGCTTCTAGGGCATGGAACTTTTGCGAAGGTTTACCATGCCCGGAACTTGCAGACTGGGACGAGCATGGCGATGAAGGTGGTTGGGAAGGAGAAGGTCATAAAAGTAGGGATGATGGAGCAGATCAAGAGGGAGATCTCTGTGATGAAGATGGTGAAGCATCCGAACATTGTTGAGCTTCATGAGGTTATGGCGAGCAAATCGAAGATCTATTTCGCTATGGAGCTTGTTCGAGGCGGAGAATTGTTCTCCAAAATTTCCAAAGGTCGATTGAGAGAAGATGTGGCTAGGGTTTACTTTCAGCAACTGATTTCCGCGATCGATTTCTGTCACAGTCGAGGAGTTTATCATCGGGACCTCAAACCGGAGAATCTTCTTCTCGACGACGACGGAAATCTTAAGGTAACTGATTTTGGACTCAGCGCATTTTCCGAGCACTTGAAACAGGATGGATTGTTACACACAACTTGTGGAACGCCGGCGTATGTTGCGCCAGAAGTTATCGGGAAGAAGGGATACAACGGCGCCAAAGCCGATCTGTGGTCATGTGGAGTCATCCTTTACGTTCTCCTCGCCGGATTTCTTCCATTCCAGGACGACAATATTGTATCCATGTACAGGAAGATTTACAGAGGAGACTTCAAGTGCCCGCCGTGGTTCTCATCGGAAGCCCGTCGACTAATCACCAAACTCCTGGATCCAAATCCGAGCACCAGAATTACAACTTCAAAGATCATGGAATCGTCCTGGTTCAAGAAATCTGTACCAAGGACTGTGGTGACGAAAGAGGAGCAAGAATTCAATGAGAGCAACGAGAAATTGAAGCAATCTGAAACATTGAACGCATTCCATATAATTTCTCTATCAGAAGGTTTCGATTTGTCGCCGTTGTTCGAGGAGAAGAAGAGGGAAGAGAAAGAGGAGCTGAGATTTGCGACGACGAGGCCAGCGAGCAGTGTGATATCGAAGCTGGAAGAGGTGGCGAAGGCAGGGAAATTCAGCGTCAAAAAGAGCGAATCGAGGGTCAGATTGCAGGGACAGGAATGCGGAAGAAAAGGGAAACTGGCGGTGGCGGCGGAGATCTTCGCGGTGACGCCATCGTTTCTGGTGGTGGAGGTGAAGAAAGATCACGGTGATACACTTGAATACAATCAGTTCTGCAGCAAAGAGCTACGGCCGGCGCTGAAAGACATCGTGTGGACATCACCGACGGAGAACTCCATGCCGGCTTGA 1293 48.8 MAEKDRDGNSGVLHGKYELGRLLGHGTFAKVYHARNLQTGTSMAMKVVGKEKVIKVGMMEQIKREISVMKMVKHPNIVELHEVMASKSKIYFAMELVRGGELFSKISKGRLREDVARVYFQQLISAIDFCHSRGVYHRDLKPENLLLDDDGNLKVTDFGLSAFSEHLKQDGLLHTTCGTPAYVAPEVIGKKGYNGAKADLWSCGVILYVLLAGFLPFQDDNIVSMYRKIYRGDFKCPPWFSSEARRLITKLLDPNPSTRITTSKIMESSWFKKSVPRTVVTKEEQEFNESNEKLKQSETLNAFHIISLSEGFDLSPLFEEKKREEKEELRFATTRPASSVISKLEEVAKAGKFSVKKSESRVRLQGQECGRKGKLAVAAEIFAVTPSFLVVEVKKDHGDTLEYNQFCSKELRPALKDIVWTSPTENSMPA 430
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 24033478 24034770 - CmPI595203_06g012870.1 Cmu06g1287 418947
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu06g1287 430 CDD CIPK_C 301 416 - -
Cmu06g1287 430 SUPERFAMILY Protein kinase-like (PK-like) 13 287 IPR011009 -
Cmu06g1287 430 Pfam NAF domain 298 357 IPR004041 GO:0007165(InterPro)
Cmu06g1287 430 ProSiteProfiles Protein kinase domain profile. 17 271 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu06g1287 430 FunFam Non-specific serine/threonine protein kinase 7 299 - -
Cmu06g1287 430 SMART serkin_6 17 271 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu06g1287 430 ProSitePatterns Serine/Threonine protein kinases active-site signature. 135 147 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu06g1287 430 ProSitePatterns Protein kinases ATP-binding region signature. 23 50 IPR017441 GO:0005524(InterPro)
Cmu06g1287 430 Gene3D Phosphorylase Kinase; domain 1 14 98 - -
Cmu06g1287 430 CDD STKc_SnRK3 16 270 - -
Cmu06g1287 430 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 7 415 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Cmu06g1287 430 FunFam Non-specific serine/threonine protein kinase 9 96 - -
Cmu06g1287 430 ProSiteProfiles NAF domain profile. 295 319 IPR018451 GO:0007165(InterPro)
Cmu06g1287 430 Gene3D Kinase associated domain 1, KA1 295 421 - -
Cmu06g1287 430 FunFam Non-specific serine/threonine protein kinase 295 420 - -
Cmu06g1287 430 Coils Coil 280 300 - -
Cmu06g1287 430 Gene3D Transferase(Phosphotransferase) domain 1 99 277 - -
Cmu06g1287 430 Pfam Protein kinase domain 17 271 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g1698 Cmu-Chr2:30841599 Cmu06g1287 Cmu-Chr6:24033478 6.30E-213 dispersed
Cmu04g0694 Cmu-Chr4:21135240 Cmu06g1287 Cmu-Chr6:24033478 9.90E-118 dispersed
Cmu04g0696 Cmu-Chr4:21231949 Cmu06g1287 Cmu-Chr6:24033478 1.30E-147 dispersed
Cmu05g0511 Cmu-Chr5:4322030 Cmu06g1287 Cmu-Chr6:24033478 4.60E-92 dispersed
Cmu06g0401 Cmu-Chr6:4576391 Cmu06g1287 Cmu-Chr6:24033478 1.90E-105 dispersed
Cmu06g0641 Cmu-Chr6:7263982 Cmu06g1287 Cmu-Chr6:24033478 2.50E-100 dispersed
Cmu06g1179 Cmu-Chr6:22677409 Cmu06g1287 Cmu-Chr6:24033478 6.00E-111 dispersed
Cmu06g1287 Cmu-Chr6:24033478 Cmu10g2059 Cmu-Chr10:26455886 3.70E-133 dispersed
Cmu05g1673 Cmu-Chr5:26723186 Cmu06g1287 Cmu-Chr6:24033478 9.50E-140 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75618 PF00069 Pkinase 1.50E-73 CL0016 Cmu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu06g1287 - - - 0.0