Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu06g1352 ATGGGCATGGAATTGAGGAAGGAAAAGCTTGTTAGGTTTTATTCTGATCACAAAAAACATAAGAAAACGGCCATTGGAAGCAGCAACGAAGCAGTGCAACTTGAGAAGTCGTCGTCAAGATACTATATTCCGTCGTCGACGTTCTTGATACCTGACAATGGACTAGGGGGAAGCAAAAGTAAATTTGCTGAAACTTTTAAAACTGAGAAGTCTAAGGTGTTTGCAGAGGACCATGAACCATGGAGCAAAAGAATACTAGACCCTGGTAGCAAAATTGTTTTGAAATGGAACAGGGTGTTCATTTGCTCATGCTTATTGGCACTCTTTGTTGACCCGCTATATCTTTACTTGCCTTCTTTGAATGGGAGTGGGAAATCCCAATGTGTAAGGACAGACTGGAAATTGCGAATTGTTGTGACCTGTTTTCGGACTGTTGCAGATTTTTTCTATCTTCTGCACATGATTATAAAGTTCAGAACAGCTTATGTTGCTCCTAGTTCTCGTGTTTTTGGGAGAGGTGAGCTTGTGATGGATCCAAAGATGATAGCAAAGAGGTATATCAGATCTGATTTTTTTGTCGATCTAGTTGCCACCCTGCCTCTCCCTCAGATGGTCATCTGGTTCATCATACCCGCAACAAGAAGTCGTCTAACTGATCATAAAAACAATGCTCTTGCGCTTATTGTTCTGCTTCAGTATATACCGAGATTGTATTTGATTTTCCCACTAAGTTCAGAAATCATTAAGGCAAATGGAGTTGTTACAAAGACAGCTTGGGCAGGAGCTGCTTATAATCTTCTACTTTATATGTTGGCTAGCCATGTTCTAGGTGCTACATGGTATTTGCTGTCAGTTGATAGATATACTTCATGCTGGAAATCATTTTGTAGGAAGAAGGAATATAATCCACTAGAATGTGACCTAACTTTTTTTGATTGTGATACATTTAACCATAATGACCGCAATACATGGGCAAATAGTACACTTGTTTTTGAAAAATGTGGCACTCATGGAGTTTTCAATTATGGCATTTTTGAGAAAGCAATGTCGAAGAATGTCGTCTCTTCAAGCTTTATTGCAAAGTACTTCTACTGTTTGTGGTGGGGCTTGCAAAACCTGAGTTCATATGGACAAAATTTGGAAACAACGACGTTCATTGGTGAGACATTGTTTGCTGTACTCATTGCCATCTTAGGCCTTGTATTATTCGCCCATCTGATTGGGAATATGCAGACGTATCTGCAATCCCTTACCGTGAGGCTCGAAGAATGGAGACTAAAGCGAAGAGATACTGAAGAGTGGATGAGACATCGTCAACTCCCTGAAGACTTGAAACGACGAGTTCGACGTTTTGTGCAATATAAGTGGGTAGCAACAAGAGGAGTTGATGAAGAAACCATCTTGCAGAGCTTGCCTGCTGATCTTCGACGCGATATTCAGTGCCACCTATGTCTAGATCTCGTCCGACGAGTTCCTTTCTTCGCCCAGATGGATGATCAGCTACTTGATGCAATATGTGAACGCCTGGTCTCCTCCTTGAGCACTGAAGGTACTTATATTGTACGGGAGGGTGACCCAGTAACAGAGATGCTGTTCATTATTCGAGGCAGATTGGAGAGTTCTACCACAAATGGAGGCCGCTCTGGTTTCTTTAACTCCATAACGTTACGTCCTGGCGACTTTTGTGGGGAGGAACTACTTTCTTGGGCTTTGCACCCAAAATCCACGACCAACTTGCCCTCCTCAACTAGAACAGTCAAGGCACTCAATGAAGTTGAAGCTTTTGCACTCTGTGCAGAAGATCTTAAATTTGTGGCCAACCAATTTAGACGTCTGCACAGTAAAAAATTGCAGCACACATTCCGCTTTTACTCTCATCATTGGAGAACATGGGCAGCCTGCTTTATTCAGGCTGCTTGGCGTCGCCATAAGAAAAGGATGATGGCAAAAGATCTCTTAATGAAAGAATCATTTACTTTATCAGAAAAAGTGACTGACGAAACTAGCCAAGGAGAGGAACAATTCTCTGTTGTTTCAAATCCTTCTCAGACTAAAACGTATCTGGATATAACCTTGCTGGCTTCAAGGTTTGCTGCAAACACAAGGAGAGGCGCTCAGAGAATGAAAGACGACTTGCCAAAGTTACAAAAGCCCGAGGAACCCGACTTTTCCATTGAGCCAGATAGATAA 2190 42.01 MGMELRKEKLVRFYSDHKKHKKTAIGSSNEAVQLEKSSSRYYIPSSTFLIPDNGLGGSKSKFAETFKTEKSKVFAEDHEPWSKRILDPGSKIVLKWNRVFICSCLLALFVDPLYLYLPSLNGSGKSQCVRTDWKLRIVVTCFRTVADFFYLLHMIIKFRTAYVAPSSRVFGRGELVMDPKMIAKRYIRSDFFVDLVATLPLPQMVIWFIIPATRSRLTDHKNNALALIVLLQYIPRLYLIFPLSSEIIKANGVVTKTAWAGAAYNLLLYMLASHVLGATWYLLSVDRYTSCWKSFCRKKEYNPLECDLTFFDCDTFNHNDRNTWANSTLVFEKCGTHGVFNYGIFEKAMSKNVVSSSFIAKYFYCLWWGLQNLSSYGQNLETTTFIGETLFAVLIAILGLVLFAHLIGNMQTYLQSLTVRLEEWRLKRRDTEEWMRHRQLPEDLKRRVRRFVQYKWVATRGVDEETILQSLPADLRRDIQCHLCLDLVRRVPFFAQMDDQLLDAICERLVSSLSTEGTYIVREGDPVTEMLFIIRGRLESSTTNGGRSGFFNSITLRPGDFCGEELLSWALHPKSTTNLPSSTRTVKALNEVEAFALCAEDLKFVANQFRRLHSKKLQHTFRFYSHHWRTWAACFIQAAWRRHKKRMMAKDLLMKESFTLSEKVTDETSQGEEQFSVVSNPSQTKTYLDITLLASRFAANTRRGAQRMKDDLPKLQKPEEPDFSIEPDR 729
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 24717597 24723541 + CmPI595203_06g013520.1 Cmu06g1352 419012
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu06g1352 729 Pfam Ion transport protein 96 420 IPR005821 GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cmu06g1352 729 Gene3D Helix hairpin bin 421 484 - -
Cmu06g1352 729 MobiDBLite consensus disorder prediction 703 729 - -
Cmu06g1352 729 Gene3D - 113 418 - -
Cmu06g1352 729 FunFam Cyclic nucleotide-gated ion channel 1 491 609 - -
Cmu06g1352 729 Pfam Cyclic nucleotide-binding domain 516 604 IPR000595 -
Cmu06g1352 729 SMART cnmp_10 493 624 IPR000595 -
Cmu06g1352 729 ProSiteProfiles cAMP/cGMP binding motif profile. 493 577 IPR000595 -
Cmu06g1352 729 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 64 710 - -
Cmu06g1352 729 CDD CAP_ED 493 624 IPR000595 -
Cmu06g1352 729 SUPERFAMILY cAMP-binding domain-like 423 615 IPR018490 -
Cmu06g1352 729 Gene3D Jelly Rolls 491 611 IPR014710 -
Cmu06g1352 729 PRINTS EAG/ELK/ERG potassium channel family signature 406 415 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Cmu06g1352 729 PRINTS EAG/ELK/ERG potassium channel family signature 388 399 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Cmu06g1352 729 PRINTS EAG/ELK/ERG potassium channel family signature 456 463 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Cmu06g1352 729 PRINTS EAG/ELK/ERG potassium channel family signature 271 281 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Cmu06g1352 729 PRINTS EAG/ELK/ERG potassium channel family signature 154 163 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Cmu06g1352 729 PRINTS EAG/ELK/ERG potassium channel family signature 362 379 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Cmu06g1352 729 SUPERFAMILY Voltage-gated potassium channels 88 415 - -
Cmu06g1352 729 FunFam Cyclic nucleotide-gated ion channel 1 420 484 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu04g0937 Cmu-Chr4:23814588 Cmu06g1352 Cmu-Chr6:24717597 6.30E-177 dispersed
Cmu04g1306 Cmu-Chr4:27345144 Cmu06g1352 Cmu-Chr6:24717597 1.20E-114 dispersed
Cmu05g2693 Cmu-Chr5:35431280 Cmu06g1352 Cmu-Chr6:24717597 7.70E-280 dispersed
Cmu06g1352 Cmu-Chr6:24717597 Cmu06g1739 Cmu-Chr6:28364609 2.30E-228 dispersed
Cmu06g1352 Cmu-Chr6:24717597 Cmu10g2195 Cmu-Chr10:28034987 3.20E-241 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu06g1352 K27629 - csv:101218643 1407.12