Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu06g1353 ATGTTGATAACACTCAGAGAAGCTGCTGCAGCTTCTTCTTCGCCCATTTCCTTCACCCTCTCCACTCAATCTCTTACCAATTCTAAGCGCTTCCTAAGACCTGGAATTTCACTCACCCGAGCTTCCTTCTCTGTTCCAGGCAAGCCCAGAGCCACCAAATCCTGGAACCTTGCCCTTATTTCCAACAGTTTTGAGAGCTCAGTTTTTGATCCGTTGGGCATCCGTCCAGATCTTTCTTCCGAATTAAGTAGTACGTGGGAAAATTTTCTTGGCTATTTTGGTCAAACATTTGATAGTGCTTCAAGCACAAAAAAAGATAAATCCCCCTCAGCTCGTGGATTGGCAGCTGCAATCGAGGACAGTTCCATTGACATAGGGGATTTCTTCAAAGGTCCCTTGCCTGGAAAATTTCTACAGCTCTTGGGCTATTTAGCTCTTTCAAGGCTTGGAATCTATATACCTCTTGGTGGAGTGAACCGGGAGGCTTTTGTTGGGAACTTGGATCAGAATAGCTTATTGAGCACTTTAGATTCCTTTTCTGGAGGAGGCATTGGTAGGCTGGGGATATGCTCCCTTGGCATTGTTCCCTTCATCAATGCACAAATTGTCTTCCAGCTTCTTGCTCAAATTTATCCAAAATTGCAAGACCTTCAGAAAAGAGAAGGTGAAGCAGGGCGAAAGAAAATTCTGCAATATACTCGATATGCCTCAGTTGGATTTGCAATCGTACAAGCAATTGGCCAAGTTCTCTACCTTCGCCCCTATGTTAATGATTTTAGTACAGAATGGGTGCTCTCTTCTGTTACTTTATTAACACTTGGCTCAGTCATAACAACGTACATTGGGGAACGGATCACAGACCTAAAGCTAGGAAATGGGACATCTCTTTTAATATTCACCAGCATCATCTCCTATTTACCAGCATCCTTTGGAAGGACCGCTGCACAGGCATTCCAGGATGGTAACTATGTAGGATTGGTTGCTATCATGATATCCTTCTTTCTATTGGTACTTGGAATTGTATATGTTCAGGAAGCGGAAAGGAAAATCCCCCTCAACTATGCCTCAAGATACACAAGCAGAGGTGGAGGACTTCAGAAATCTGCTTACCTGCCCTTCAAGGTAAATAGTTCTGGTGTGATGCCGATCATTTTCTCGACATCAACATTAGCCCTTCCGGGTACTCTAGCTCGCTTCACGGGGTTATCAGTCCTAAAGAAGGCTGCACTTGCTTTAAATCCAGGAGGTTCGTTCTATCTGCCAACCAACATCCTTTTGATAGCCTTCTTCAACTATTACTACACATTCCTACAATTGGATCCCGATGATGTGAGTGAACAATTGAAGCGGCAGGGTGCTTCGATTCCCCTCGTCCGTCCAGGCAAAAGTACAGCTTCATTTCTGAAAGCGGTTCTAAGTCGGATTTCAGTACTTGGTTCAGCCTTCTTGGCAATCCTTGCTGCTGGTCCTGCGGTGATTGAGCAAACAACACATTTGACGGCATTTCGAGGATTTGCGGGAACCTCTGTTCTTATACTTGTTGGTTGTGCTACAGACACTGCCAGAAAAGTACAAGCTGAGATAATTTCCCAGAAGTACAAGAATATAGAGTTCTACGACATTGATAGGTATACTCCTTGA 1641 44.18 MLITLREAAAASSSPISFTLSTQSLTNSKRFLRPGISLTRASFSVPGKPRATKSWNLALISNSFESSVFDPLGIRPDLSSELSSTWENFLGYFGQTFDSASSTKKDKSPSARGLAAAIEDSSIDIGDFFKGPLPGKFLQLLGYLALSRLGIYIPLGGVNREAFVGNLDQNSLLSTLDSFSGGGIGRLGICSLGIVPFINAQIVFQLLAQIYPKLQDLQKREGEAGRKKILQYTRYASVGFAIVQAIGQVLYLRPYVNDFSTEWVLSSVTLLTLGSVITTYIGERITDLKLGNGTSLLIFTSIISYLPASFGRTAAQAFQDGNYVGLVAIMISFFLLVLGIVYVQEAERKIPLNYASRYTSRGGGLQKSAYLPFKVNSSGVMPIIFSTSTLALPGTLARFTGLSVLKKAALALNPGGSFYLPTNILLIAFFNYYYTFLQLDPDDVSEQLKRQGASIPLVRPGKSTASFLKAVLSRISVLGSAFLAILAAGPAVIEQTTHLTAFRGFAGTSVLILVGCATDTARKVQAEIISQKYKNIEFYDIDRYTP 546
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 24726067 24730119 - CmPI595203_06g013530.1 Cmu06g1353 419013
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu06g1353 546 ProSitePatterns Protein secY signature 1. 188 207 IPR030659 -
Cmu06g1353 546 PRINTS Preprotein translocase SecY subunit signature 287 310 - -
Cmu06g1353 546 PRINTS Preprotein translocase SecY subunit signature 378 397 - -
Cmu06g1353 546 PRINTS Preprotein translocase SecY subunit signature 417 439 - -
Cmu06g1353 546 PRINTS Preprotein translocase SecY subunit signature 187 207 - -
Cmu06g1353 546 PRINTS Preprotein translocase SecY subunit signature 261 286 - -
Cmu06g1353 546 PRINTS Preprotein translocase SecY subunit signature 506 524 - -
Cmu06g1353 546 PRINTS Preprotein translocase SecY subunit signature 137 155 - -
Cmu06g1353 546 PRINTS Preprotein translocase SecY subunit signature 229 252 - -
Cmu06g1353 546 PRINTS Preprotein translocase SecY subunit signature 472 490 - -
Cmu06g1353 546 ProSitePatterns Protein secY signature 2. 280 297 IPR030659 -
Cmu06g1353 546 Hamap Protein translocase subunit SecY [secY]. 125 537 IPR026593 -
Cmu06g1353 546 NCBIfam preprotein translocase subunit SecY 136 533 IPR002208 GO:0015031(InterPro)|GO:0016020(InterPro)
Cmu06g1353 546 PANTHER SECY/SEC61-ALPHA FAMILY MEMBER 128 536 IPR002208 GO:0005048(PANTHER)|GO:0006616(PANTHER)|GO:0008320(PANTHER)|GO:0009535(PANTHER)|GO:0015031(InterPro)|GO:0016020(InterPro)
Cmu06g1353 546 FunFam Preprotein translocase subunit SECY, chloroplastic 128 533 - -
Cmu06g1353 546 Gene3D SecY subunit domain 128 533 IPR023201 -
Cmu06g1353 546 Pfam SecY 189 520 IPR002208 GO:0015031(InterPro)|GO:0016020(InterPro)
Cmu06g1353 546 SUPERFAMILY Preprotein translocase SecY subunit 129 527 IPR023201 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu06g1353 K10956 - csv:101222431 1000.73