Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu06g1363 ATGGGATCTTCTTTCAGTTGCTGTGATTCTGAGAAAGTAGACCAAGGGTTGGGTGGAGGCAACAGTTCATGGAGGATGTATACGTACAAGGAGTTGCATGCAGCTACCAACGGTTTCCATGACGATAACAAGCTGGGAGAAGGAGGATTTGGAAGTGTTTATTGGGGAAAGACCACCGATGGCCTTCAGATAGCGGTGAAGAAGTTGAAAGCGATGAATTATAAGGCAGAAATGGAGTTTGCGGTGGAAGTGGAAGTGCTGGCGAGGCTGAGGCATAAGAATCTGTTGGGTCTGAGAGGCTATTGTGTGGGGACTGATCAAAGGCTTATTGTTTATGATTACATGCCAAATCTCAGCTTGTTGTCTCATCTTCATGGCCACTTTGCTTCTGAAGCTCTCTTGGATTGGAAAACAAGAATGAAAATTGCTCTTGGCTCTGCTGAAGGCATTTTGTATTTGCACCAAGAAGTAAGCCCCCACATAATCCACAGAGACATAAAAGCAAGCAATGTGCTACTAGACTCAGACTTTGAGCCATTAGTAGCTGATTTCGGGTTTGCAAAACTAATCCCAGAAGGGGTTAGCCACATGACAACTCGCGTCAAAGGGACCTTAGGTTATCTTGCTCCCGAATACGCCATGTGGGGCAAAGTTTCGGAGAGCTGTGACGTTTTCAGCTACGGCATTCTTTTACTCGAGCTGATGACCGGAAGGAAGCCGATCGAAAGACTCCCCGGCGGAGCAAAGAGAACCATTTCAGAATGGGTTAACATCACAATAAACAAAGACAGATTCAAAGACTTAGCTGATAGGAAGCTAAAGGGACAACTCAATTGGAAAGAGTTCGAACAAGTAATGCATTTGGCAATTATGTGTGTGCAAACCGAGGCAGAGAAACGGCCTACTATAAAACAAGTAGTGGATTGTTTGAAAGGTTTGATGGCTGATGCTGGAAATTACAACAAAGTGCCCCTATTAATGACTATTCCAAGTGTTAGATCATATGATAATAATACTAATGAAGATCGTCGACATCAGCTGGCTAGCAAAGAATTTCATGGTGGAGGAAGAGATGATCAAGAGAGTTTTGATTATGGGGTTTTTAGTGCCATTGAAGAGCAGAGGATCATAAGAGAATATCCTTATAATAATAATAAACAACCTCCAAATTTTTGGAGAATGAATGCTTAA 1191 42.82 MGSSFSCCDSEKVDQGLGGGNSSWRMYTYKELHAATNGFHDDNKLGEGGFGSVYWGKTTDGLQIAVKKLKAMNYKAEMEFAVEVEVLARLRHKNLLGLRGYCVGTDQRLIVYDYMPNLSLLSHLHGHFASEALLDWKTRMKIALGSAEGILYLHQEVSPHIIHRDIKASNVLLDSDFEPLVADFGFAKLIPEGVSHMTTRVKGTLGYLAPEYAMWGKVSESCDVFSYGILLLELMTGRKPIERLPGGAKRTISEWVNITINKDRFKDLADRKLKGQLNWKEFEQVMHLAIMCVQTEAEKRPTIKQVVDCLKGLMADAGNYNKVPLLMTIPSVRSYDNNTNEDRRHQLASKEFHGGGRDDQESFDYGVFSAIEEQRIIREYPYNNNKQPPNFWRMNA 396
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 24834701 24837796 + CmPI595203_06g013630.1 Cmu06g1363 419023
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu06g1363 396 SMART serkin_6 39 310 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu06g1363 396 PANTHER OS01G0750732 PROTEIN 22 323 IPR050885 -
Cmu06g1363 396 Gene3D Transferase(Phosphotransferase) domain 1 115 321 - -
Cmu06g1363 396 SUPERFAMILY Protein kinase-like (PK-like) 21 330 IPR011009 -
Cmu06g1363 396 ProSitePatterns Serine/Threonine protein kinases active-site signature. 161 173 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu06g1363 396 FunFam PTI1-like tyrosine-protein kinase At3g15890 115 323 - -
Cmu06g1363 396 Gene3D Phosphorylase Kinase; domain 1 11 114 - -
Cmu06g1363 396 Pfam Protein kinase domain 39 307 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu06g1363 396 ProSiteProfiles Protein kinase domain profile. 39 314 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu06g1363 396 FunFam PTI1-like tyrosine-protein kinase At3g15890 11 114 - -
Cmu06g1363 396 ProSitePatterns Protein kinases ATP-binding region signature. 45 68 IPR017441 GO:0005524(InterPro)
Cmu06g1363 396 CDD STKc_IRAK 45 313 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu05g0864 Cmu-Chr5:7859750 Cmu06g1363 Cmu-Chr6:24834701 2.70E-111 dispersed
Cmu06g1363 Cmu-Chr6:24834701 Cmu07g1225 Cmu-Chr7:27553333 1.20E-114 dispersed
Cmu11g1239 Cmu-Chr11:24260496 Cmu06g1363 Cmu-Chr6:24834701 1.70E-59 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75623 PF00069 Pkinase 7.10E-45 CL0016 Cmu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu06g1363 - - - 0.0