Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu06g1365 ATGGGAATTGACGCTGACAGTGTTGTAAAGGGTTTCGGCGGCGGATGGGGCGTCGTCGCTAAACCTTGCGATTCCTGCAAGACTGCCCCTGCCGCCGTCTATTGTCGTCCGGACTCTGCTTTCCTCTGCCTTCCCTGCGACGCCAAAATTCACTGCGCTAACAAGCTCGCCTCTCGCCATGAGCGCGTCTGGATGTGTGAAGTTTGTGAACAAGCTCCTGCTGTGGTTATGTGCAAGGCTGATGCTGCGGCTCTCTGTGTCACCTGCGATGCCGATATTCACTCTGCTAACCCACTGGCCCGTCGCCACGAGCGTGTCCCGGTCGAGCCTTTTTTCGACACGGCTGAATCAGTTGTTAAATCCTCCTCTGTTTTGAATTTTCTTGTCCCTAATGAAACCAACGCCAGTGTTTGCGACGGTGCCCATCACCACGAGGAAGTGGAGGTTGCCTCCTGGCTTTTATCCAACCCGTCTTTCAACTCTAAGCTTGTGGACGGCTCTGAAATCAAACCCCCTGGCGGTGATCAGTTGTTCTTCAATGAAATGGATTCTTTCATTGATTTTGAATACCCAAATCCAGTCAACAACCACAGCGCTATTAACGACAGCGTCGTCCCTATTCAGACGAAGCCACTCTCTACACCGGTGATTAACCATACCCACTCCCCTGAAAATTGCTACGACATTGATTTTTGCAGATCCAAGCTCAATTCATTCGGCTATCAACCTCAATCGCTGAGCCACAGTGTTTCCTCTTCCTCCCTAGAAGTCGGAGTTGTTCCAGAAGGGAATTCGATGTCGGACATATCATACCCGTTGGGTCAAAACGCGAGTAACGGGGCGGATTCGGGGCTACCGTTATCAGGATCCGGCAACCAAGCGACACAATTGTGTGGAATGGATCGAGAAGCGAGAGTGTTGAGGTACAGAGAGAAGAGGAAGAACCGGAAATTCGAGAAGACAATCCGATACGCTTCAAGAAAAGCTTATGCGGAAACCCGGCCCAGAATCAAAGGCCGGTTCGCTAAACGGACTGATATGTTATCAGAGGTTGATGAAATCTATGGCTCGGCTGCTTCGTCTATGTTCCTGACGGACGTCCAATACGGCGTCGTACCAACGTTTTGA 1128 50.98 MGIDADSVVKGFGGGWGVVAKPCDSCKTAPAAVYCRPDSAFLCLPCDAKIHCANKLASRHERVWMCEVCEQAPAVVMCKADAAALCVTCDADIHSANPLARRHERVPVEPFFDTAESVVKSSSVLNFLVPNETNASVCDGAHHHEEVEVASWLLSNPSFNSKLVDGSEIKPPGGDQLFFNEMDSFIDFEYPNPVNNHSAINDSVVPIQTKPLSTPVINHTHSPENCYDIDFCRSKLNSFGYQPQSLSHSVSSSSLEVGVVPEGNSMSDISYPLGQNASNGADSGLPLSGSGNQATQLCGMDREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTDMLSEVDEIYGSAASSMFLTDVQYGVVPTF 375
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 24850234 24851457 - CmPI595203_06g013650.1 Cmu06g1365 419025
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu06g1365 375 ProSiteProfiles Zinc finger B-box type profile. 23 65 IPR000315 GO:0008270(InterPro)
Cmu06g1365 375 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 16 359 IPR045281 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0009909(InterPro)|GO:0009909(PANTHER)
Cmu06g1365 375 CDD Bbox1_BBX-like 66 108 IPR049808 -
Cmu06g1365 375 CDD Bbox1_BBX-like 22 65 IPR049808 -
Cmu06g1365 375 ProSiteProfiles CCT domain profile. 302 344 IPR010402 GO:0005515(InterPro)
Cmu06g1365 375 ProSiteProfiles Zinc finger B-box type profile. 61 108 IPR000315 GO:0008270(InterPro)
Cmu06g1365 375 Pfam CCT motif 302 344 IPR010402 GO:0005515(InterPro)
Cmu06g1365 375 SMART bboxneu5 18 65 IPR000315 GO:0008270(InterPro)
Cmu06g1365 375 SMART bboxneu5 66 108 IPR000315 GO:0008270(InterPro)
Cmu06g1365 375 Pfam B-box zinc finger 62 108 IPR000315 GO:0008270(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu06g1365 Cmu-Chr6:24850234 Cmu08g0489 Cmu-Chr8:16366593 7.80E-10 dispersed
Cmu02g0856 Cmu-Chr2:10340237 Cmu06g1365 Cmu-Chr6:24850234 3.20E-06 transposed
Cmu05g2293 Cmu-Chr5:32275409 Cmu06g1365 Cmu-Chr6:24850234 2.80E-07 transposed
Cmu07g1509 Cmu-Chr7:30295524 Cmu06g1365 Cmu-Chr6:24850234 5.30E-06 transposed
Cmu07g1594 Cmu-Chr7:31117840 Cmu06g1365 Cmu-Chr6:24850234 4.20E-29 transposed
Cmu08g1327 Cmu-Chr8:25505946 Cmu06g1365 Cmu-Chr6:24850234 7.40E-68 transposed
Cmu11g1240 Cmu-Chr11:24326424 Cmu06g1365 Cmu-Chr6:24850234 8.10E-56 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6406 PF00643 zf-B_box 6.70E-07 No_clan Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu06g1365 - - - 0.0