Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu06g1388 ATGGCAACCCTCCAAATTCGTGGCATCGAAACCGAAATCTCTGTGGAGTTTCTGGTAGATCGAATCATCGACCTTCACAAAAGCATCTCGGAGCTTGAAACCCTAAAGCCATGCAAGAAAGTGAACCTCCTCTTCACCAACCTAGTGAACTTGTGCATTTTGCCTTGCTCAATGGATGTCTCAACATTGCCACCAAATGTACAAGCCATTCGTGAGAGCCTCATAGTTCTATGTGGCCAAGCTGAAAGCTTACTCGAGTTAGAATTCTCAACTTTGCTAAGCAAAATCCCCAAACCTCTCAACAATCTCACTCTATTTCCATATTACCACAACTACGTCAAATTAGCCAACCTTGAAAACAAGATTTTGAAAGACAATGGAGTTGTCAATCCAAAGAAGGTAGCTTTTGTTGGGTCAGGTCCTTTGCCTCTAACTTCAATTATTATGGCCATGAAACACATGAAGGGCACGTATTTCGATAACTATGATATAGACAGCGTGGCGAATGATGTGGCGGGAAAGATCGTGGGATCGGACGCTGAGCTGGAGGGAAGAATGAAGTTTTGGACGAGGGATATTGTTGAGGTAAAAGAAGAGCTTGGAGGATATGATTGTGTGTTTTTGGCGGCTCTTGTGGGGATGAAGAAGGAAGATAAAGTGAAGATTATAAAGCATTTAAGAAAGTATATGAAAGAAGGTGGGATTGTGGTAGTGAGAAGTGCTAAAGGAGGTAGAGCATTTTTGTACCCTGTGGTTGAAGTTGGAGATTTGGTTGGCTTTGAGATTCTCTCTATTTTTCATCCCACTGATGATGTTGTTAATTCGGTTATCTTAGTTCGCAAGCCTGTGATTATATGA 858 41.96 MATLQIRGIETEISVEFLVDRIIDLHKSISELETLKPCKKVNLLFTNLVNLCILPCSMDVSTLPPNVQAIRESLIVLCGQAESLLELEFSTLLSKIPKPLNNLTLFPYYHNYVKLANLENKILKDNGVVNPKKVAFVGSGPLPLTSIIMAMKHMKGTYFDNYDIDSVANDVAGKIVGSDAELEGRMKFWTRDIVEVKEELGGYDCVFLAALVGMKKEDKVKIIKHLRKYMKEGGIVVVRSAKGGRAFLYPVVEVGDLVGFEILSIFHPTDDVVNSVILVRKPVII 285
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 25039779 25040636 - CmPI595203_06g013880.1 Cmu06g1388 419048
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu06g1388 285 Pfam Nicotianamine synthase protein 15 282 IPR004298 GO:0030410(InterPro)|GO:0030418(InterPro)
Cmu06g1388 285 Gene3D Vaccinia Virus protein VP39 14 282 IPR029063 -
Cmu06g1388 285 ProSiteProfiles Nicotianamine synthase (NAS)-like family profile. 10 285 IPR004298 GO:0030410(InterPro)|GO:0030418(InterPro)
Cmu06g1388 285 PANTHER NICOTIANAMINE SYNTHASE 3 12 282 IPR004298 GO:0030410(InterPro)|GO:0030418(InterPro)
Cmu06g1388 285 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 127 277 IPR029063 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g1489 Cmu-Chr2:28649203 Cmu06g1388 Cmu-Chr6:25039779 4.60E-67 dispersed
Cmu06g1388 Cmu-Chr6:25039779 Cmu03g2355 Cmu-Chr3:32202274 1.60E-76 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu06g1388 K05953 - csv:101209464 484.567