Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu06g1391 ATGGCGGCCGACGACGATTCCTCACCGGAGTTCATATTCCGGTCAAAACTCCCCGACATCGCCATCCCCACCCACCTCCCCTTGCACTCATATTGCTTCGAAAAAATCTCCGAATTCAAATACCGTCCATGTCTAATCAACGCCGCCACGGGCAACACCTATACCTACGACGAAGTCCACATAACATCCCGCCGAGTGACCGCCGGTCTTCACAAGTTAGGCATCGGAAAAGGCGACGTCATCATGCTCCTCCTCCAAAACACCCCACAGTTCGTTTTAGCCTTCCTCGGCGCCTCCTACCTGGGCGCCGCCACCACCCCGGCGAACCCATTCTTCACGCCGGCGGAAATTGCAAAACAAGCGATGTCATCCGGCGCCAAACTTATCATAACCCAAGCAGCGTTTGCAGAAAAAGTGAAAAAACTATCTCAAGAAAACAAGGCGATCATCAAAGTAATCTTCATCGACGACGACCCTCCGCCGGACGGAGGATATCATTTTTCGTCGTTGACTGATGAGGTGGCAAAAGAGGAGGAAAGGGAAATGGGAGATGTGAAAATCAGCCCAGACGACGTCGTTGCGTTGCCTTATTCGTCTGGGACCACCGGTCTTCCAAAAGGAGTTATGCTGACTCATAAAGCTCTAGTGACCAGCGTGGCACAACAGGTGGACGGTGAGAACCCACACCTATACATCCGAAGCGACGACGTCGTTCTGTGCGTGCTTCCTTTGTTTCACATATATTCCCTAAACTCAATCATGATGTGTTCGTTACGAGTAGGAGCTGCGATTTTAATCGTACAAAAATTCGACGTTAATTCGCTTCTGGAATTGATTCCTAAATATAGAGTCACCATTGCACCCATTGTTCCTCCTATTGTACTTGCAATTGCCAAGAGTCCGGCTCTGGACCATTACGACATGTCGTCCATACGTATTGTGATGTCGGGAGCCGCGCCCTTGGGGAAAACTCTTGAAGATGCCTTTAGAGCCAAGCTTCCCCATGTCATTCTCGGCCAGGGATACGGAATGACGGAGTCGGGGTCCGCGATGACAATGTCGTTGGCGTTTGCAAAGGAGAGGTTCGAGATAAAATCGGGAGGTTGTGGGACGTTAATGAGAAATTCAGAGATGAAGATTGTAAACCCTCAAACGGGAGCGTCTCTTCCAAGGAATCAAGCTGGGGAGATTTGTATTAGAAGCCCTCAGATTATGAAAGGATACCTCAACGACGAAGAGGCCACGAAGGGCATAATTGACAAAGATGGATGGCTGCACACCGGCGATATAGGTTTCGTCGATGACGACGACGAGGTCTTCATCGTCGATCGTCTCAAGGAACTGATCAAATACAAAGGCTTCCAAGTGGCGCCGGCGGAGTTGGAAGCCCTGCTTATATCCCACGGTCGCATCGCTGATGCCGCGGTTATACCTATGAAAGATGAAGTTGCTGGAGAGGTTCCGGTTGCGTTCATTGTCCGATCCGACGGTTCCAAAATCACAGAGGATGAAATTAAGCAATACATCTCCAAACAGGTTGTGTTCTATAAGAGGATTAATCGTGTCTTCTTCGTGGATTCTATTCCTAAAAGTCAATCTGGCAAAATCTTACGGAGACAACTCAGAGTTTTACTCGCAGCTAGTATTCCTAATTAA 1656 49.09 MAADDDSSPEFIFRSKLPDIAIPTHLPLHSYCFEKISEFKYRPCLINAATGNTYTYDEVHITSRRVTAGLHKLGIGKGDVIMLLLQNTPQFVLAFLGASYLGAATTPANPFFTPAEIAKQAMSSGAKLIITQAAFAEKVKKLSQENKAIIKVIFIDDDPPPDGGYHFSSLTDEVAKEEEREMGDVKISPDDVVALPYSSGTTGLPKGVMLTHKALVTSVAQQVDGENPHLYIRSDDVVLCVLPLFHIYSLNSIMMCSLRVGAAILIVQKFDVNSLLELIPKYRVTIAPIVPPIVLAIAKSPALDHYDMSSIRIVMSGAAPLGKTLEDAFRAKLPHVILGQGYGMTESGSAMTMSLAFAKERFEIKSGGCGTLMRNSEMKIVNPQTGASLPRNQAGEICIRSPQIMKGYLNDEEATKGIIDKDGWLHTGDIGFVDDDDEVFIVDRLKELIKYKGFQVAPAELEALLISHGRIADAAVIPMKDEVAGEVPVAFIVRSDGSKITEDEIKQYISKQVVFYKRINRVFFVDSIPKSQSGKILRRQLRVLLAASIPN 551
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 25068067 25072113 - CmPI595203_06g013910.1 Cmu06g1391 419051
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu06g1391 551 Gene3D - 446 547 IPR045851 -
Cmu06g1391 551 Pfam AMP-binding enzyme C-terminal domain 460 535 IPR025110 -
Cmu06g1391 551 ProSitePatterns Putative AMP-binding domain signature. 195 206 IPR020845 -
Cmu06g1391 551 FunFam Long-chain-fatty-acid--CoA ligase FadD 14 446 - -
Cmu06g1391 551 Gene3D - 3 445 IPR042099 -
Cmu06g1391 551 FunFam 4-coumarate--CoA ligase 2 447 548 - -
Cmu06g1391 551 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 10 542 - GO:0016405(PANTHER)
Cmu06g1391 551 Pfam AMP-binding enzyme 37 409 IPR000873 -
Cmu06g1391 551 SUPERFAMILY Acetyl-CoA synthetase-like 11 547 - -
Cmu06g1391 551 CDD 4CL 22 541 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu06g1391 Cmu-Chr6:25068067 Cmu09g0340 Cmu-Chr9:3258736 1.50E-206 dispersed
Cmu01g0271 Cmu-Chr1:2780406 Cmu06g1391 Cmu-Chr6:25068067 3.60E-45 transposed
Cmu01g0764 Cmu-Chr1:8602324 Cmu06g1391 Cmu-Chr6:25068067 7.90E-22 transposed
Cmu01g2461 Cmu-Chr1:36560459 Cmu06g1391 Cmu-Chr6:25068067 1.30E-23 transposed
Cmu02g0770 Cmu-Chr2:8551609 Cmu06g1391 Cmu-Chr6:25068067 4.30E-174 transposed
Cmu03g0895 Cmu-Chr3:3500142 Cmu06g1391 Cmu-Chr6:25068067 4.50E-107 transposed
Cmu05g1314 Cmu-Chr5:15041509 Cmu06g1391 Cmu-Chr6:25068067 1.60E-23 transposed
Cmu05g1567 Cmu-Chr5:25049289 Cmu06g1391 Cmu-Chr6:25068067 2.90E-98 transposed
Cmu05g2194 Cmu-Chr5:31396677 Cmu06g1391 Cmu-Chr6:25068067 1.70E-93 transposed
Cmu07g0270 Cmu-Chr7:2648584 Cmu06g1391 Cmu-Chr6:25068067 7.30E-92 transposed
Cmu10g2044 Cmu-Chr10:26208718 Cmu06g1391 Cmu-Chr6:25068067 1.80E-209 transposed
Cmu10g2729 Cmu-Chr10:33970409 Cmu06g1391 Cmu-Chr6:25068067 8.10E-102 transposed
Cmu11g1368 Cmu-Chr11:25831942 Cmu06g1391 Cmu-Chr6:25068067 3.70E-109 transposed
Cmu11g1269 Cmu-Chr11:24730608 Cmu06g1391 Cmu-Chr6:25068067 1.60E-194 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu06g1391 K01904 - csv:101218077 882.478