Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu06g1405 ATGAATTCTTCTTCTTCAGCTTCTCCAGATTGGCTTGCTTTCTCTCTCTCCAATAATCCCAACTCTCTTTCTCTCTTCCATCATCATCCTAATTCTACTGATCTCTCTATCTTCTCCCCCACCGCCCCCAAGCTTGAGGACTTTCTCCGGGGAGCTTCCACTCCTCCGCCGCCGCCTTCGCCTTCTCCCTTTCACTTTTCTCCCCATCAATCTGAGATTTGTGATTCTGATCTCAAAACTATAGCTGCTAGTTTCCTCCATGGACCACCAACCACCCATTTCCCTGAGCAACACTTTCACCATCTTCACGCGCCACCGCCACCGCCACCGCCTCCTACTCAATCCGATACTTCACCGCCCCCACCTCCTAAGAAGGCCGTTGATACTTTTGGCCAACGCACCTCTATTTACCGCGGTGTTACAAGGCATAGATGGACTGGTCGATATGAAGCTCATTTGTGGGATAATAGTTGCAGGAGAGAAGGTCAGAGTAGAAAAGGAAGACAAGTTTATTTGGGTGGTTATGACAAAGAAGAAAAAGCAGCTAGAGCTTATGATCTCGCCGCTCTCAAGTACTGGGGTCCGACCACCACCACCAACTTTCCGGTGTCGAACTACGAAAAAGAACTGGAGGATATGAAGAACATGACCAGACAAGAATTTGTTGCTTCATTAAGAAGGAGAAGCAGCGGTTTTTCTAGAGGAGCATCTATATACAGAGGTGTAACAAGGCACCACCAACATGGCAGATGGCAAGCAAGAATCGGAAGGGTTGCTGGCAATAAAGATCTCTATCTTGGGACATTCAGCACTCAGGAAGAAGCAGCTGAAGCCTATGATATAGCAGCCATAAAATTCAGAGGCCTCAATGCCGTTACTAACTTTGACATCAGTCGTTACGACGTGAAGAGCATTGCCAGCAGCAACCTCCCCATCGGAGGGATGTCGAGCACCAAATCCAAAACCACCTCCGAGTCCGCTGCCTCGGACGGAGGCAGCCGATCGGCCGAAGAACGTGACGTCCATCATTCTCCTCCATCGTCAACCGCAACTTTCATCTCGTCGCAGCCGAACAACAACTCCTCCTCGAGTAATCTTAGCTTTGCAATGCCCATCAAACAAGACCCATCGGATCAATATTGGTCTATCCTCGGCTACAATAACCCCAGCGCCTACAACACAAACCTCCCAAAACCCGACGATATTCCACCATTGTCGTCGTCAATGTTTCAACAACCTGGATCCACAATGTTTCCTACCATAACCGACTTAGCATCTAGCGGATCACCGCTGACCGAAGGCGGGATGTACGTACAGCAGCAGCAACAACAATATGCAACACCGATTGCATTAAGTAGCGGAATAAGCATTGAGATTGGGCAATCAATGAGGGGGTTCGAAGCTCATGCAAAGCCAAGCCTTTTTCAGACGCCAATATTTGGAATGGAATGA 1452 48.69 MNSSSSASPDWLAFSLSNNPNSLSLFHHHPNSTDLSIFSPTAPKLEDFLRGASTPPPPPSPSPFHFSPHQSEICDSDLKTIAASFLHGPPTTHFPEQHFHHLHAPPPPPPPPTQSDTSPPPPPKKAVDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQVYLGGYDKEEKAARAYDLAALKYWGPTTTTNFPVSNYEKELEDMKNMTRQEFVASLRRRSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGLNAVTNFDISRYDVKSIASSNLPIGGMSSTKSKTTSESAASDGGSRSAEERDVHHSPPSSTATFISSQPNNNSSSSNLSFAMPIKQDPSDQYWSILGYNNPSAYNTNLPKPDDIPPLSSSMFQQPGSTMFPTITDLASSGSPLTEGGMYVQQQQQQYATPIALSSGISIEIGQSMRGFEAHAKPSLFQTPIFGME 483
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 25215087 25218997 + CmPI595203_06g014050.1 Cmu06g1405 419065
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu06g1405 483 MobiDBLite consensus disorder prediction 311 331 - -
Cmu06g1405 483 SUPERFAMILY DNA-binding domain 237 298 IPR016177 GO:0003677(InterPro)
Cmu06g1405 483 CDD AP2 135 204 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu06g1405 483 Pfam AP2 domain 239 288 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu06g1405 483 Pfam AP2 domain 137 194 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu06g1405 483 Gene3D AP2/ERF domain 238 298 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu06g1405 483 Gene3D AP2/ERF domain 136 204 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu06g1405 483 MobiDBLite consensus disorder prediction 101 126 - -
Cmu06g1405 483 FunFam AP2-like ethylene-responsive transcription factor ANT 135 204 - -
Cmu06g1405 483 FunFam AP2-like ethylene-responsive transcription factor 237 298 - -
Cmu06g1405 483 ProSiteProfiles AP2/ERF domain profile. 136 202 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu06g1405 483 MobiDBLite consensus disorder prediction 345 369 - -
Cmu06g1405 483 CDD AP2 237 298 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu06g1405 483 SUPERFAMILY DNA-binding domain 135 204 IPR016177 GO:0003677(InterPro)
Cmu06g1405 483 SMART rav1_2 238 302 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu06g1405 483 SMART rav1_2 136 208 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu06g1405 483 MobiDBLite consensus disorder prediction 311 369 - -
Cmu06g1405 483 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 92 360 - -
Cmu06g1405 483 MobiDBLite consensus disorder prediction 47 70 - -
Cmu06g1405 483 PRINTS Ethylene responsive element binding protein signature 278 298 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu06g1405 483 PRINTS Ethylene responsive element binding protein signature 137 148 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu06g1405 483 ProSiteProfiles AP2/ERF domain profile. 238 296 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu06g1405 483 MobiDBLite consensus disorder prediction 85 129 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu05g2265 Cmu-Chr5:32048980 Cmu06g1405 Cmu-Chr6:25215087 2.50E-68 dispersed
Cmu06g1405 Cmu-Chr6:25215087 Cmu11g0801 Cmu-Chr11:9496474 3.40E-98 dispersed
Cmu06g1405 Cmu-Chr6:25215087 Cmu01g1727 Cmu-Chr1:30967935 4.60E-95 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6410 PF00847 AP2 3.50E-13 CL0081 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu06g1405 K09285 - csv:101210453 688.337