Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmu06g1405 | ATGAATTCTTCTTCTTCAGCTTCTCCAGATTGGCTTGCTTTCTCTCTCTCCAATAATCCCAACTCTCTTTCTCTCTTCCATCATCATCCTAATTCTACTGATCTCTCTATCTTCTCCCCCACCGCCCCCAAGCTTGAGGACTTTCTCCGGGGAGCTTCCACTCCTCCGCCGCCGCCTTCGCCTTCTCCCTTTCACTTTTCTCCCCATCAATCTGAGATTTGTGATTCTGATCTCAAAACTATAGCTGCTAGTTTCCTCCATGGACCACCAACCACCCATTTCCCTGAGCAACACTTTCACCATCTTCACGCGCCACCGCCACCGCCACCGCCTCCTACTCAATCCGATACTTCACCGCCCCCACCTCCTAAGAAGGCCGTTGATACTTTTGGCCAACGCACCTCTATTTACCGCGGTGTTACAAGGCATAGATGGACTGGTCGATATGAAGCTCATTTGTGGGATAATAGTTGCAGGAGAGAAGGTCAGAGTAGAAAAGGAAGACAAGTTTATTTGGGTGGTTATGACAAAGAAGAAAAAGCAGCTAGAGCTTATGATCTCGCCGCTCTCAAGTACTGGGGTCCGACCACCACCACCAACTTTCCGGTGTCGAACTACGAAAAAGAACTGGAGGATATGAAGAACATGACCAGACAAGAATTTGTTGCTTCATTAAGAAGGAGAAGCAGCGGTTTTTCTAGAGGAGCATCTATATACAGAGGTGTAACAAGGCACCACCAACATGGCAGATGGCAAGCAAGAATCGGAAGGGTTGCTGGCAATAAAGATCTCTATCTTGGGACATTCAGCACTCAGGAAGAAGCAGCTGAAGCCTATGATATAGCAGCCATAAAATTCAGAGGCCTCAATGCCGTTACTAACTTTGACATCAGTCGTTACGACGTGAAGAGCATTGCCAGCAGCAACCTCCCCATCGGAGGGATGTCGAGCACCAAATCCAAAACCACCTCCGAGTCCGCTGCCTCGGACGGAGGCAGCCGATCGGCCGAAGAACGTGACGTCCATCATTCTCCTCCATCGTCAACCGCAACTTTCATCTCGTCGCAGCCGAACAACAACTCCTCCTCGAGTAATCTTAGCTTTGCAATGCCCATCAAACAAGACCCATCGGATCAATATTGGTCTATCCTCGGCTACAATAACCCCAGCGCCTACAACACAAACCTCCCAAAACCCGACGATATTCCACCATTGTCGTCGTCAATGTTTCAACAACCTGGATCCACAATGTTTCCTACCATAACCGACTTAGCATCTAGCGGATCACCGCTGACCGAAGGCGGGATGTACGTACAGCAGCAGCAACAACAATATGCAACACCGATTGCATTAAGTAGCGGAATAAGCATTGAGATTGGGCAATCAATGAGGGGGTTCGAAGCTCATGCAAAGCCAAGCCTTTTTCAGACGCCAATATTTGGAATGGAATGA | 1452 | 48.69 | MNSSSSASPDWLAFSLSNNPNSLSLFHHHPNSTDLSIFSPTAPKLEDFLRGASTPPPPPSPSPFHFSPHQSEICDSDLKTIAASFLHGPPTTHFPEQHFHHLHAPPPPPPPPTQSDTSPPPPPKKAVDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQVYLGGYDKEEKAARAYDLAALKYWGPTTTTNFPVSNYEKELEDMKNMTRQEFVASLRRRSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGLNAVTNFDISRYDVKSIASSNLPIGGMSSTKSKTTSESAASDGGSRSAEERDVHHSPPSSTATFISSQPNNNSSSSNLSFAMPIKQDPSDQYWSILGYNNPSAYNTNLPKPDDIPPLSSSMFQQPGSTMFPTITDLASSGSPLTEGGMYVQQQQQQYATPIALSSGISIEIGQSMRGFEAHAKPSLFQTPIFGME | 483 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 25215087 | 25218997 | + | CmPI595203_06g014050.1 | Cmu06g1405 | 419065 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmu06g1405 | 483 | MobiDBLite | consensus disorder prediction | 311 | 331 | - | - | |
Cmu06g1405 | 483 | SUPERFAMILY | DNA-binding domain | 237 | 298 | IPR016177 | GO:0003677(InterPro) | |
Cmu06g1405 | 483 | CDD | AP2 | 135 | 204 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cmu06g1405 | 483 | Pfam | AP2 domain | 239 | 288 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cmu06g1405 | 483 | Pfam | AP2 domain | 137 | 194 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cmu06g1405 | 483 | Gene3D | AP2/ERF domain | 238 | 298 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cmu06g1405 | 483 | Gene3D | AP2/ERF domain | 136 | 204 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cmu06g1405 | 483 | MobiDBLite | consensus disorder prediction | 101 | 126 | - | - | |
Cmu06g1405 | 483 | FunFam | AP2-like ethylene-responsive transcription factor ANT | 135 | 204 | - | - | |
Cmu06g1405 | 483 | FunFam | AP2-like ethylene-responsive transcription factor | 237 | 298 | - | - | |
Cmu06g1405 | 483 | ProSiteProfiles | AP2/ERF domain profile. | 136 | 202 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cmu06g1405 | 483 | MobiDBLite | consensus disorder prediction | 345 | 369 | - | - | |
Cmu06g1405 | 483 | CDD | AP2 | 237 | 298 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cmu06g1405 | 483 | SUPERFAMILY | DNA-binding domain | 135 | 204 | IPR016177 | GO:0003677(InterPro) | |
Cmu06g1405 | 483 | SMART | rav1_2 | 238 | 302 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cmu06g1405 | 483 | SMART | rav1_2 | 136 | 208 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cmu06g1405 | 483 | MobiDBLite | consensus disorder prediction | 311 | 369 | - | - | |
Cmu06g1405 | 483 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 92 | 360 | - | - | |
Cmu06g1405 | 483 | MobiDBLite | consensus disorder prediction | 47 | 70 | - | - | |
Cmu06g1405 | 483 | PRINTS | Ethylene responsive element binding protein signature | 278 | 298 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cmu06g1405 | 483 | PRINTS | Ethylene responsive element binding protein signature | 137 | 148 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cmu06g1405 | 483 | ProSiteProfiles | AP2/ERF domain profile. | 238 | 296 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cmu06g1405 | 483 | MobiDBLite | consensus disorder prediction | 85 | 129 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmu05g2265 | Cmu-Chr5:32048980 | Cmu06g1405 | Cmu-Chr6:25215087 | 2.50E-68 | dispersed | |
Cmu06g1405 | Cmu-Chr6:25215087 | Cmu11g0801 | Cmu-Chr11:9496474 | 3.40E-98 | dispersed | |
Cmu06g1405 | Cmu-Chr6:25215087 | Cmu01g1727 | Cmu-Chr1:30967935 | 4.60E-95 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
6410 | PF00847 | AP2 | 3.50E-13 | CL0081 | Cmu | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmu06g1405 | K09285 | - | csv:101210453 | 688.337 |