Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu06g1419 ATGTATCTTACAACCATAGGAGAGGGGGAGGGGAATATGGCGGCCGGAGAAGAGGAGATGGCGGCGGCGGCAGCGGCGTCGGGAGTGGCCGGAAAGAAGGGTGGTGGGTTGCAGAAAAGTTACTTTGATGTGTTGGGGATTTGTTGTTCTTCGGAAATTCCAGTGATTGAGAATATATTGAAGGAGATTGAAGGGATTAAAGAGATTAGAGTGATTGTAGCTACAAGAACTGTCATTGTTCTTCATGATAATCTTCTTGTTTCTCAAACACAAATTGTTAAAGCCCTAAATCAAGCAAGATTTGAAGCGAACGTTAGAGCGTACGGAGATCAGAAAGATCACCGGAAAAAATGGCCGAGCCCGTACGCGGTGGCGAGTGGCATGTTGCTGCTGCTGTCGTTACTGAAATATGTGAATCCTATTTTCCGATGGGTAGCTTTAGCCGCCGTTGCCGCCGGAATCTGGCCCATTGTCCTCAAAAGCTTCGCCGCCGTTCGCCATCTCAGAATCGACATCAACATTCTTGCTTTAATTGCAGTGATCGGGACAATTGTGCTGAAGGATTATTTGGAAGCGGCCACCATCGTCTTCCTCTTCACCATCGCCGAATGGCTCGAGTCCAGAGCCGCACACAAGGCGAACGCCGTCATGTCATCCCTTCTAAGCATCGCTCCTCAGAAAGCGGTTCTAGCCGACACCGGCGAAGTTGTCGGCGCCGACGAGGTCAAATTGGGGACTCTGCTGGCTGTGAAGGCCGGCGAAGACATTCCCATTGATGGAATCGTTGTGGAAGGAAACTGCGAAGTGGATGAGAAAACACTTACTGGTGAATCTTTCCCTGTTCCCAAACAGAAGAATTCCACTGTTTGGGCTGGTACCATTAATCTAAATGGCTATGTTACTGTAAAGACTACTGCGCTTGCTGAAGACTGTGTGGTGGCCAAAATGGCTAAGCTGGTTGAAGAGGCCCAAAACAATAAATCTAGGACTCAAAGGTTCATTGACAAATGTGCCAAATTCTATACTCCAGCTGTTATAATCATATCAACTTGCATAGTAGTGATTCCAATTGCTTTGAGACTTCCCAATCACAGACATTGGTTTCACTTGGCCCTGGTTGTGTTAGTAAGCGCGTGTCCCTGTGCACTCATCCTTTCCACGCCTGTTGCGTCTTTCTGTGCACTTACTAAGGCAGCAACATCTGGTCTTTTAATTAAAGGAGGTGACTACCTTGAAACTCTTGGCAAAATTAAGATCATGGCCTTTGATAAAACTGGGACAATAACAAGAGGTGAATTTATGGTGACTGAATTTCAAGTTCTTGATAAGGACAATATAAGCTTAGACACATTGCTATATTGGGTGTCAAGCATTGAGAGCAAGTCCAGTCATCCAATGGCAGCTGCACTTGTTGACCATGGAAGATCACTATCCGTTGATCCCAAACCTGAAAATGTGGATGACTTTCAAAATTTTCCTGGAGAAGGTGTTTATGGGAGAATTGATGGGAAAGACATTTATATTGGAAATCGAAAAATTGCTACAAGAGCCAACTGTGCAACAGTCCCAGAGATCAAAGATGAAGCGAAGGATGGGAGGACTGTTGGATACATATTCTGTGGAGCTACTGCAGCTGGAATCTTTAGTCTATCTGATTCTTGCAGAACAGGAGCTAAGGAGGCCATGGATGAGCTTCGATCTCTCGGTATAAAAACAGCCATGCTCACAGGAGACTGTTCTGCAGCAGCCTTGCAAGCACAAAAAGAATTGGGAAAGGCTTTACAAACAGTCCATGCAGAACTTCTACCTGAAGACAAGACAAGACTCATCAATGACTTTAAAAAGGAGGGACCAACAGCTATGATTGGAGATGGTTTGAACGACGCCCCTGCCTTGGCCACAGCTGATATTGGTATATCAATGGGAATCTCAGGTTCAGCCCTTGCAATAGAAACTGGAGATGTAATTCTTATGACTAATGATATCAGGAAAGTTCCAAAAGCCATTCGACTTGCAAGAAGAGCTAATAATAAAGTAATCGAAAATGTGATTCTGTCAATTGCTCCTAGGATTGCTATACTCGGCCTAGCATTTGGTGGTCATCCACTTGTTTGGGCAGCAGTTCTTGCTGATGTCGGTGCCTGTGTGCTAGTTATCCTCAACAGTATGCTCCTGCTGCGAGGAACTGACGGACCCAAGGGGAAAAAAGCTGGCAAGTTTTCTGCTACTCACTGTTCCTCCAAACATAAATGCTGTGATGTTAGTAGCCATTCAGATGAATATAGTGGCCACACCCATGATCGGTGCGACAATCACAGTTCCCACTCTTCTAGACATCGTCACCATCACCATCACCATCACCATGAGCACGAGGACTGCACCTCTCTCAAGAAAACTCATGATGGTTGTTTACCTCAGAACCATGCTTCCAAGTGTGTCTCCAGGTTGAAAAGTTCAAGTTTATGCAAGAAAAGTAAACTTGTGGACTCAAGTTCTAAGGTAGATGGTTCTACCGGCAATGTAAACCTCTGTGAACATGATCACGGGTGCAACACTGACAGCTCCGACTCTTCTAGTCATCATCACCACCACCACCATCATCATCATGAGCACAAAGACTGTGGCTCTCTCAAGAAAACTCATGAAGGTTGCTTACCTCAGAACTGTGCTTCCAAGTGTGATTCCGGGATGAAGACTTCAAGTTCATGCAAGAAAAGTAAACTCGTGGAGTCAAGTTCTAAGGTAGATGATTCTGCAGGCAGTCTAAATCTGTGTGAACATGGACATGTCCATAACGACCAGCCTGCTGATCATGACCATCATGCTTATTCTTCGTGCGCACATCATGTCGAGAACAAACATCACTCTCCAAAGATTACACAAGAGTTTTGCTCGTTTCAGAAGCGTGCATCAAATTCATGTGAGAAAATCAAGTGCACAAGCTCAGCTGCAACCCTTGATGGTTCTGCTGTCATTCTTGAGCTCCATGAAAGTGGATGTTGTTCTCATAATGACCAATCTGCTCAACATGATCATGACATCCAAACTCCCAAGTGTGATTTGGATGACAGCCACTCATCCAGTCCTGAGCATCATGTTGGTAATGGTTGTAGCTCTCAAAAGAACCATGAGCACTGCCACCAAGGAAGCTTCGACACTTCTGATTTCATCTTGGAATCCCATGAAAAGCACAGGAAAAATTGCAGTGGACCTTGTAAATCAAAATCAATAAGCGGGTGCACAGACGATGAATGCAGGGAAAAGGTTGAAATGATAGATGATTGCGCTGAAGCAAACAGGCACCACAAAACGAAACAACATCATTGCGATACTCATTTGAGTCTTCAAAATGAAGGGGTTCATCCTCATTGTAAGGCATCAAATGGAGATAATAATGGAGCAATCAACAATACAGTTAATATCGAGCTCGAAGCACACCATTCAAACCCAGAATGCCCCAGCACTTGTAATAAGGCTTCGGAAAACAATGGGACAAACAACTGTAAAAGCTGCAAAAGGGGAAGCTCACAACTCCAAATTGGAAAATCTTGTGCAGGTTTGGATAAGAGAAAAATGGGTGGGTGTTGTAAGAGCTACATGAAGGAGTGTTGTAGGAAGCATGGCGATATCAGAATGGCGGTCCGAGGAGGCTTAAATGAAATTATTATAGAATAG 3675 44.68 MYLTTIGEGEGNMAAGEEEMAAAAAASGVAGKKGGGLQKSYFDVLGICCSSEIPVIENILKEIEGIKEIRVIVATRTVIVLHDNLLVSQTQIVKALNQARFEANVRAYGDQKDHRKKWPSPYAVASGMLLLLSLLKYVNPIFRWVALAAVAAGIWPIVLKSFAAVRHLRIDINILALIAVIGTIVLKDYLEAATIVFLFTIAEWLESRAAHKANAVMSSLLSIAPQKAVLADTGEVVGADEVKLGTLLAVKAGEDIPIDGIVVEGNCEVDEKTLTGESFPVPKQKNSTVWAGTINLNGYVTVKTTALAEDCVVAKMAKLVEEAQNNKSRTQRFIDKCAKFYTPAVIIISTCIVVIPIALRLPNHRHWFHLALVVLVSACPCALILSTPVASFCALTKAATSGLLIKGGDYLETLGKIKIMAFDKTGTITRGEFMVTEFQVLDKDNISLDTLLYWVSSIESKSSHPMAAALVDHGRSLSVDPKPENVDDFQNFPGEGVYGRIDGKDIYIGNRKIATRANCATVPEIKDEAKDGRTVGYIFCGATAAGIFSLSDSCRTGAKEAMDELRSLGIKTAMLTGDCSAAALQAQKELGKALQTVHAELLPEDKTRLINDFKKEGPTAMIGDGLNDAPALATADIGISMGISGSALAIETGDVILMTNDIRKVPKAIRLARRANNKVIENVILSIAPRIAILGLAFGGHPLVWAAVLADVGACVLVILNSMLLLRGTDGPKGKKAGKFSATHCSSKHKCCDVSSHSDEYSGHTHDRCDNHSSHSSRHRHHHHHHHHEHEDCTSLKKTHDGCLPQNHASKCVSRLKSSSLCKKSKLVDSSSKVDGSTGNVNLCEHDHGCNTDSSDSSSHHHHHHHHHHEHKDCGSLKKTHEGCLPQNCASKCDSGMKTSSSCKKSKLVESSSKVDDSAGSLNLCEHGHVHNDQPADHDHHAYSSCAHHVENKHHSPKITQEFCSFQKRASNSCEKIKCTSSAATLDGSAVILELHESGCCSHNDQSAQHDHDIQTPKCDLDDSHSSSPEHHVGNGCSSQKNHEHCHQGSFDTSDFILESHEKHRKNCSGPCKSKSISGCTDDECREKVEMIDDCAEANRHHKTKQHHCDTHLSLQNEGVHPHCKASNGDNNGAINNTVNIELEAHHSNPECPSTCNKASENNGTNNCKSCKRGSSQLQIGKSCAGLDKRKMGGCCKSYMKECCRKHGDIRMAVRGGLNEIIIE 1224
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 25414504 25422752 + CmPI595203_06g014190.1 Cmu06g1419 419079
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu06g1419 1224 CDD P-type_ATPase_HM 122 724 - -
Cmu06g1419 1224 MobiDBLite consensus disorder prediction 860 874 - -
Cmu06g1419 1224 ProSitePatterns E1-E2 ATPases phosphorylation site. 423 429 IPR018303 -
Cmu06g1419 1224 MobiDBLite consensus disorder prediction 854 874 - -
Cmu06g1419 1224 SUPERFAMILY Calcium ATPase, transduction domain A 235 320 IPR008250 -
Cmu06g1419 1224 Gene3D - 210 324 - -
Cmu06g1419 1224 SUPERFAMILY HAD-like 421 723 IPR036412 -
Cmu06g1419 1224 ProSitePatterns Hypothetical cof family signature 2. 622 644 - -
Cmu06g1419 1224 MobiDBLite consensus disorder prediction 1012 1040 - -
Cmu06g1419 1224 Gene3D - 36 107 - -
Cmu06g1419 1224 FunFam Copper-transporting ATPase 1, putative 210 324 - -
Cmu06g1419 1224 PANTHER CADMIUM/ZINC-TRANSPORTING ATPASE HMA2-RELATED 37 925 IPR051014 GO:0016020(PANTHER)|GO:0022857(PANTHER)|GO:0055085(PANTHER)
Cmu06g1419 1224 MobiDBLite consensus disorder prediction 1012 1029 - -
Cmu06g1419 1224 FunFam Putative cadmium/zinc-transporting ATPase 3 432 554 - -
Cmu06g1419 1224 Pfam haloacid dehalogenase-like hydrolase 417 636 - -
Cmu06g1419 1224 MobiDBLite consensus disorder prediction 763 791 - -
Cmu06g1419 1224 SUPERFAMILY HMA, heavy metal-associated domain 35 109 IPR036163 GO:0046872(InterPro)
Cmu06g1419 1224 Gene3D - 412 673 IPR023214 -
Cmu06g1419 1224 SFLD p-type atpase 404 674 IPR044492 -
Cmu06g1419 1224 Gene3D - 432 554 IPR023299 GO:0000166(InterPro)
Cmu06g1419 1224 PRINTS P-type cation-transporting ATPase superfamily signature 270 284 - -
Cmu06g1419 1224 PRINTS P-type cation-transporting ATPase superfamily signature 568 578 - -
Cmu06g1419 1224 PRINTS P-type cation-transporting ATPase superfamily signature 421 435 - -
Cmu06g1419 1224 PRINTS P-type cation-transporting ATPase superfamily signature 622 641 - -
Cmu06g1419 1224 PRINTS P-type cation-transporting ATPase superfamily signature 646 658 - -
Cmu06g1419 1224 ProSitePatterns Anaphylatoxin domain signature. 1170 1204 IPR000020 GO:0005576(InterPro)
Cmu06g1419 1224 NCBIfam heavy metal translocating P-type ATPase 172 725 IPR027256 GO:0006812(InterPro)|GO:0016020(InterPro)|GO:0019829(InterPro)
Cmu06g1419 1224 FunFam Putative cadmium/zinc-transporting ATPase 3 34 107 - -
Cmu06g1419 1224 ProSiteProfiles Heavy-metal-associated domain profile. 38 104 IPR006121 GO:0046872(InterPro)
Cmu06g1419 1224 NCBIfam HAD-IC family P-type ATPase 195 700 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Cmu06g1419 1224 Pfam E1-E2 ATPase 231 400 - -
Cmu06g1419 1224 SFLD Haloacid Dehalogenase 404 674 - -
Cmu06g1419 1224 SUPERFAMILY Calcium ATPase, transmembrane domain M 172 415 IPR023298 -
Cmu06g1419 1224 NCBIfam cadmium family heavy metal-translocating P-type ATPase 172 515 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu06g1419 Cmu-Chr6:25414504 Cmu10g1720 Cmu-Chr10:19920812 1.70E-58 dispersed
Cmu06g1412 Cmu-Chr6:25307334 Cmu06g1419 Cmu-Chr6:25414504 1.60E-19 proximal
Cmu02g0769 Cmu-Chr2:8520675 Cmu06g1419 Cmu-Chr6:25414504 7.20E-56 transposed
Cmu02g0828 Cmu-Chr2:9783723 Cmu06g1419 Cmu-Chr6:25414504 2.20E-45 transposed
Cmu11g1204 Cmu-Chr11:23505617 Cmu06g1419 Cmu-Chr6:25414504 3.00E-283 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu06g1419 K01534 - gmx:100817567 1081.24