Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmu06g1427 | ATGAGAGGTGTTGAAAGGAGATTGATTGAGAAGGAATCTGGAAAATGTTCTCACGCCAAGCTGGAAACTGGATCAGAGTTGATCTTTCCTCTGAAGTTGAAAAGGTGTAGCAAAATATCCCATTCCAAGCAGAAAAAATCAAGAACGAAGTCACATTCACAGCCAATTTGTTCAACATTCAAGAGGAGACCTCTTCCTAAATCCTTGAGCAAGGGGAATAAAAATGTGACAATTAGGCAATTGGCTGGTAAAAAATTTCGGCTAAAAAAACTTGATACAAAATCTTCCAAGGAGTTACTTTTGTCTAAGCTTCGAGGTGGAAAATCTCTGTCATCAACTAATATGAAAGGAGATGCAGAAAATGTTGAGCCGGTGGTCAAGAAAAACCAACAAAGGAAAAGGAGGAAGAGCAAAGGAAAAAAGGAAAAAGTTGAGTTAGATGAAGCTTCTCGCCTACAGAGGAGAACGAGATACCTTATAATTAAAATGAAGGCAGAGCAAAACCTTATTGATGCGTACTCTGGAGAAGGTTGGAAAGGCCAGAGGGCAAGCCAATCCGAGAACCTGAGTAGGCTGCATTGCACACATGTGGAAAATGATCTGACCTTTTGTTGTTATGTGGGTTCTCCCCCCCACATAACTATTTACTACAGTCGAGAAAAAATTAGGCCAGAAAAGGAACTTCAGAGAGCCATGAAGCAGATATTAAAGTACAAACTTGGAATCCGTGATGCTATTCGCCAGCTGGATTTGCTTGGTTCAGTAGGATGCATTGAAGACTCTGTTATTGGTCCTGATGGATCTGTCTACCACGAACATATATTCTGTGCAAAATGCAAATTGCGTGAAGCTTTTCCAGACAATGACATTATACTTTGCGATGGAACATGCAACTGTGCTTTTCACCAAAAATGTCTGGATCCACCGTTAGACACAAAAAATATTCCTCCAGGAGACCAGGGTTGGTTTTGCAAATTTTGCGAGTGCAAGATGGACATATTGGAAGGAATGAATGCACATCTTGGTACTCGATTCTCATTGAACATTAGTTGGGAGGACGTTTTCAAAGAAGAAGCTGCTTTCCCAGATGGTGGAAATGCGTTGCTTAATCATGAGGAGGATTGGCCCTCCGATGATTCTGAAGATGATGACTATGATCCAGATAAGAAGGAGAAGGGCTATGACAACGCAAGTGGGGAAGAAAATGATAAAGATGTTTTGGAGGAGTCCAGTAGTTCAACCAGCTTGAGTTGGTCTTTAGATGACGAGGATTTAACTGCTAGAGATGGTATTGGATGTGAAGATCACTTTGGTGCCGGTAGCAGCATGGTCTCTGATGGATCCAATGAGGAGGGTATCACATGCGGCCGTCGGCAGCGGCAGGCTGTTGATTATAAAAAGTTATATGTCGAAATGTTTGGAAAGGATGCTCCACCACACGAACAAGAAGTTAGTGAAGATGAAGACTGGGGACCTGCAAAAAGAAGACGGAGAGAAAAGGAATGTGATGCTGCAAGTACTCTCATGTCCCTCTGTGAAAGTGAAAAAAAAAGTCAAGACATTGACATGGAAGCAGAGAAAAAACTTCACAATTCTCACAGTAGATCATTTTTCAGAATCCCACGTTATGCAGTTGAGAAACTTCGCCAAGTGTTTGCTGATAATGAACTTCCCTCTAGAGACGTCAAGGAGAACCTTTCAAAAGAACTGGGTCTTGATGCTGAAAAGGTCAGCAAATGGTTCAAGAATGCACGATATTCTGCACTAAGAACTAGAAAGGCGGAGGGAGCAGCACAACCCCATAGTTCTCATAAGACTTTCAATGAGTCCAGGTTAGCAGATTCAAAGGAAATGTCTGCGAACCTTCTTTCATTAGAGGATGCACCAATAAAAGAACTGCAGCTGAAATTGCGCGGAAGTCATTGCAAGAAAAAGCAGCACAGAAAATCATCACTTGTTTCTTCCAACTATGACAAGGATGGTTTTGATTTTGGTGATGATATTAGCTTGAAGAATCTCCTAAAGAATAGAAAAACAAAGGTAAAGAAGAGGGTAAACTTTGTAGCTAGAGGTGGAGGCCAAGAAGCAGAAGTGGAGATGGAGAGATTGTGTAACATTAAGGGTAGATTAGAGACAATGAAGCAGAAATTACTTAGACTATCAAATAAGAAAGATTATGGGATTTTAGATAGGTCACACATGTTTGAACAGCCTATTGTATATGTTCCTGTAGCAGTGTTAAAGGAAAAGTTTTACGCCGGTAAGGGAATAGCTATGACGTTCTCCAAGAGAAAACGAGACAAAAAGCCAGCAGAAAAAGATGGTAAATGGCTCACACATCATATTTAG | 2349 | 41.0 | MRGVERRLIEKESGKCSHAKLETGSELIFPLKLKRCSKISHSKQKKSRTKSHSQPICSTFKRRPLPKSLSKGNKNVTIRQLAGKKFRLKKLDTKSSKELLLSKLRGGKSLSSTNMKGDAENVEPVVKKNQQRKRRKSKGKKEKVELDEASRLQRRTRYLIIKMKAEQNLIDAYSGEGWKGQRASQSENLSRLHCTHVENDLTFCCYVGSPPHITIYYSREKIRPEKELQRAMKQILKYKLGIRDAIRQLDLLGSVGCIEDSVIGPDGSVYHEHIFCAKCKLREAFPDNDIILCDGTCNCAFHQKCLDPPLDTKNIPPGDQGWFCKFCECKMDILEGMNAHLGTRFSLNISWEDVFKEEAAFPDGGNALLNHEEDWPSDDSEDDDYDPDKKEKGYDNASGEENDKDVLEESSSSTSLSWSLDDEDLTARDGIGCEDHFGAGSSMVSDGSNEEGITCGRRQRQAVDYKKLYVEMFGKDAPPHEQEVSEDEDWGPAKRRRREKECDAASTLMSLCESEKKSQDIDMEAEKKLHNSHSRSFFRIPRYAVEKLRQVFADNELPSRDVKENLSKELGLDAEKVSKWFKNARYSALRTRKAEGAAQPHSSHKTFNESRLADSKEMSANLLSLEDAPIKELQLKLRGSHCKKKQHRKSSLVSSNYDKDGFDFGDDISLKNLLKNRKTKVKKRVNFVARGGGQEAEVEMERLCNIKGRLETMKQKLLRLSNKKDYGILDRSHMFEQPIVYVPVAVLKEKFYAGKGIAMTFSKRKRDKKPAEKDGKWLTHHI | 782 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 25503568 | 25512035 | + | CmPI595203_06g014270.1 | Cmu06g1427 | 419087 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmu06g1427 | 782 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 267 | 324 | IPR013083 | - | |
Cmu06g1427 | 782 | ProSiteProfiles | 'Homeobox' domain profile. | 531 | 591 | IPR001356 | GO:0003677(InterPro) | |
Cmu06g1427 | 782 | MobiDBLite | consensus disorder prediction | 386 | 408 | - | - | |
Cmu06g1427 | 782 | Pfam | PHD-finger | 276 | 327 | IPR019787 | - | |
Cmu06g1427 | 782 | SUPERFAMILY | FYVE/PHD zinc finger | 266 | 332 | IPR011011 | - | |
Cmu06g1427 | 782 | Gene3D | - | 533 | 604 | - | - | |
Cmu06g1427 | 782 | CDD | PHD_PRHA_like | 275 | 327 | IPR045876 | - | |
Cmu06g1427 | 782 | PANTHER | POLYCOMB-LIKE TRANSCRIPTION FACTOR | 30 | 747 | - | GO:0003677(PANTHER)|GO:0003682(PANTHER)|GO:0005634(PANTHER)|GO:0006325(PANTHER)|GO:0006355(PANTHER) | |
Cmu06g1427 | 782 | MobiDBLite | consensus disorder prediction | 38 | 74 | - | - | |
Cmu06g1427 | 782 | ProSitePatterns | Zinc finger PHD-type signature. | 276 | 327 | IPR019786 | - | |
Cmu06g1427 | 782 | CDD | homeodomain | 539 | 592 | IPR001356 | GO:0003677(InterPro) | |
Cmu06g1427 | 782 | Pfam | Homeodomain | 542 | 586 | IPR001356 | GO:0003677(InterPro) | |
Cmu06g1427 | 782 | SMART | HOX_1 | 533 | 595 | IPR001356 | GO:0003677(InterPro) | |
Cmu06g1427 | 782 | MobiDBLite | consensus disorder prediction | 592 | 611 | - | - | |
Cmu06g1427 | 782 | FunFam | pathogenesis-related homeodomain protein-like | 267 | 327 | - | - | |
Cmu06g1427 | 782 | MobiDBLite | consensus disorder prediction | 366 | 421 | - | - | |
Cmu06g1427 | 782 | MobiDBLite | consensus disorder prediction | 110 | 148 | - | - | |
Cmu06g1427 | 782 | FunFam | pathogenesis-related homeodomain protein | 533 | 597 | - | - | |
Cmu06g1427 | 782 | SUPERFAMILY | Homeodomain-like | 534 | 597 | IPR009057 | - | |
Cmu06g1427 | 782 | ProSiteProfiles | Zinc finger PHD-type profile. | 273 | 330 | IPR019787 | - | |
Cmu06g1427 | 782 | SMART | PHD_3 | 275 | 328 | IPR001965 | - | |
Cmu06g1427 | 782 | MobiDBLite | consensus disorder prediction | 474 | 498 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmu05g1147 | Cmu-Chr5:10904549 | Cmu06g1427 | Cmu-Chr6:25503568 | 2.70E-53 | dispersed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
6411 | PF00628 | PHD | 1.30E-09 | CL0390 | Cmu | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmu06g1427 | - | - | - | 0.0 |