Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu06g1427 ATGAGAGGTGTTGAAAGGAGATTGATTGAGAAGGAATCTGGAAAATGTTCTCACGCCAAGCTGGAAACTGGATCAGAGTTGATCTTTCCTCTGAAGTTGAAAAGGTGTAGCAAAATATCCCATTCCAAGCAGAAAAAATCAAGAACGAAGTCACATTCACAGCCAATTTGTTCAACATTCAAGAGGAGACCTCTTCCTAAATCCTTGAGCAAGGGGAATAAAAATGTGACAATTAGGCAATTGGCTGGTAAAAAATTTCGGCTAAAAAAACTTGATACAAAATCTTCCAAGGAGTTACTTTTGTCTAAGCTTCGAGGTGGAAAATCTCTGTCATCAACTAATATGAAAGGAGATGCAGAAAATGTTGAGCCGGTGGTCAAGAAAAACCAACAAAGGAAAAGGAGGAAGAGCAAAGGAAAAAAGGAAAAAGTTGAGTTAGATGAAGCTTCTCGCCTACAGAGGAGAACGAGATACCTTATAATTAAAATGAAGGCAGAGCAAAACCTTATTGATGCGTACTCTGGAGAAGGTTGGAAAGGCCAGAGGGCAAGCCAATCCGAGAACCTGAGTAGGCTGCATTGCACACATGTGGAAAATGATCTGACCTTTTGTTGTTATGTGGGTTCTCCCCCCCACATAACTATTTACTACAGTCGAGAAAAAATTAGGCCAGAAAAGGAACTTCAGAGAGCCATGAAGCAGATATTAAAGTACAAACTTGGAATCCGTGATGCTATTCGCCAGCTGGATTTGCTTGGTTCAGTAGGATGCATTGAAGACTCTGTTATTGGTCCTGATGGATCTGTCTACCACGAACATATATTCTGTGCAAAATGCAAATTGCGTGAAGCTTTTCCAGACAATGACATTATACTTTGCGATGGAACATGCAACTGTGCTTTTCACCAAAAATGTCTGGATCCACCGTTAGACACAAAAAATATTCCTCCAGGAGACCAGGGTTGGTTTTGCAAATTTTGCGAGTGCAAGATGGACATATTGGAAGGAATGAATGCACATCTTGGTACTCGATTCTCATTGAACATTAGTTGGGAGGACGTTTTCAAAGAAGAAGCTGCTTTCCCAGATGGTGGAAATGCGTTGCTTAATCATGAGGAGGATTGGCCCTCCGATGATTCTGAAGATGATGACTATGATCCAGATAAGAAGGAGAAGGGCTATGACAACGCAAGTGGGGAAGAAAATGATAAAGATGTTTTGGAGGAGTCCAGTAGTTCAACCAGCTTGAGTTGGTCTTTAGATGACGAGGATTTAACTGCTAGAGATGGTATTGGATGTGAAGATCACTTTGGTGCCGGTAGCAGCATGGTCTCTGATGGATCCAATGAGGAGGGTATCACATGCGGCCGTCGGCAGCGGCAGGCTGTTGATTATAAAAAGTTATATGTCGAAATGTTTGGAAAGGATGCTCCACCACACGAACAAGAAGTTAGTGAAGATGAAGACTGGGGACCTGCAAAAAGAAGACGGAGAGAAAAGGAATGTGATGCTGCAAGTACTCTCATGTCCCTCTGTGAAAGTGAAAAAAAAAGTCAAGACATTGACATGGAAGCAGAGAAAAAACTTCACAATTCTCACAGTAGATCATTTTTCAGAATCCCACGTTATGCAGTTGAGAAACTTCGCCAAGTGTTTGCTGATAATGAACTTCCCTCTAGAGACGTCAAGGAGAACCTTTCAAAAGAACTGGGTCTTGATGCTGAAAAGGTCAGCAAATGGTTCAAGAATGCACGATATTCTGCACTAAGAACTAGAAAGGCGGAGGGAGCAGCACAACCCCATAGTTCTCATAAGACTTTCAATGAGTCCAGGTTAGCAGATTCAAAGGAAATGTCTGCGAACCTTCTTTCATTAGAGGATGCACCAATAAAAGAACTGCAGCTGAAATTGCGCGGAAGTCATTGCAAGAAAAAGCAGCACAGAAAATCATCACTTGTTTCTTCCAACTATGACAAGGATGGTTTTGATTTTGGTGATGATATTAGCTTGAAGAATCTCCTAAAGAATAGAAAAACAAAGGTAAAGAAGAGGGTAAACTTTGTAGCTAGAGGTGGAGGCCAAGAAGCAGAAGTGGAGATGGAGAGATTGTGTAACATTAAGGGTAGATTAGAGACAATGAAGCAGAAATTACTTAGACTATCAAATAAGAAAGATTATGGGATTTTAGATAGGTCACACATGTTTGAACAGCCTATTGTATATGTTCCTGTAGCAGTGTTAAAGGAAAAGTTTTACGCCGGTAAGGGAATAGCTATGACGTTCTCCAAGAGAAAACGAGACAAAAAGCCAGCAGAAAAAGATGGTAAATGGCTCACACATCATATTTAG 2349 41.0 MRGVERRLIEKESGKCSHAKLETGSELIFPLKLKRCSKISHSKQKKSRTKSHSQPICSTFKRRPLPKSLSKGNKNVTIRQLAGKKFRLKKLDTKSSKELLLSKLRGGKSLSSTNMKGDAENVEPVVKKNQQRKRRKSKGKKEKVELDEASRLQRRTRYLIIKMKAEQNLIDAYSGEGWKGQRASQSENLSRLHCTHVENDLTFCCYVGSPPHITIYYSREKIRPEKELQRAMKQILKYKLGIRDAIRQLDLLGSVGCIEDSVIGPDGSVYHEHIFCAKCKLREAFPDNDIILCDGTCNCAFHQKCLDPPLDTKNIPPGDQGWFCKFCECKMDILEGMNAHLGTRFSLNISWEDVFKEEAAFPDGGNALLNHEEDWPSDDSEDDDYDPDKKEKGYDNASGEENDKDVLEESSSSTSLSWSLDDEDLTARDGIGCEDHFGAGSSMVSDGSNEEGITCGRRQRQAVDYKKLYVEMFGKDAPPHEQEVSEDEDWGPAKRRRREKECDAASTLMSLCESEKKSQDIDMEAEKKLHNSHSRSFFRIPRYAVEKLRQVFADNELPSRDVKENLSKELGLDAEKVSKWFKNARYSALRTRKAEGAAQPHSSHKTFNESRLADSKEMSANLLSLEDAPIKELQLKLRGSHCKKKQHRKSSLVSSNYDKDGFDFGDDISLKNLLKNRKTKVKKRVNFVARGGGQEAEVEMERLCNIKGRLETMKQKLLRLSNKKDYGILDRSHMFEQPIVYVPVAVLKEKFYAGKGIAMTFSKRKRDKKPAEKDGKWLTHHI 782
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 25503568 25512035 + CmPI595203_06g014270.1 Cmu06g1427 419087
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu06g1427 782 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 267 324 IPR013083 -
Cmu06g1427 782 ProSiteProfiles 'Homeobox' domain profile. 531 591 IPR001356 GO:0003677(InterPro)
Cmu06g1427 782 MobiDBLite consensus disorder prediction 386 408 - -
Cmu06g1427 782 Pfam PHD-finger 276 327 IPR019787 -
Cmu06g1427 782 SUPERFAMILY FYVE/PHD zinc finger 266 332 IPR011011 -
Cmu06g1427 782 Gene3D - 533 604 - -
Cmu06g1427 782 CDD PHD_PRHA_like 275 327 IPR045876 -
Cmu06g1427 782 PANTHER POLYCOMB-LIKE TRANSCRIPTION FACTOR 30 747 - GO:0003677(PANTHER)|GO:0003682(PANTHER)|GO:0005634(PANTHER)|GO:0006325(PANTHER)|GO:0006355(PANTHER)
Cmu06g1427 782 MobiDBLite consensus disorder prediction 38 74 - -
Cmu06g1427 782 ProSitePatterns Zinc finger PHD-type signature. 276 327 IPR019786 -
Cmu06g1427 782 CDD homeodomain 539 592 IPR001356 GO:0003677(InterPro)
Cmu06g1427 782 Pfam Homeodomain 542 586 IPR001356 GO:0003677(InterPro)
Cmu06g1427 782 SMART HOX_1 533 595 IPR001356 GO:0003677(InterPro)
Cmu06g1427 782 MobiDBLite consensus disorder prediction 592 611 - -
Cmu06g1427 782 FunFam pathogenesis-related homeodomain protein-like 267 327 - -
Cmu06g1427 782 MobiDBLite consensus disorder prediction 366 421 - -
Cmu06g1427 782 MobiDBLite consensus disorder prediction 110 148 - -
Cmu06g1427 782 FunFam pathogenesis-related homeodomain protein 533 597 - -
Cmu06g1427 782 SUPERFAMILY Homeodomain-like 534 597 IPR009057 -
Cmu06g1427 782 ProSiteProfiles Zinc finger PHD-type profile. 273 330 IPR019787 -
Cmu06g1427 782 SMART PHD_3 275 328 IPR001965 -
Cmu06g1427 782 MobiDBLite consensus disorder prediction 474 498 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu05g1147 Cmu-Chr5:10904549 Cmu06g1427 Cmu-Chr6:25503568 2.70E-53 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6411 PF00628 PHD 1.30E-09 CL0390 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu06g1427 - - - 0.0