Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu06g1439 ATGGCGGTGGATCTCGCAGCTTTTCCGGCCAAGATGGATGATCAAACCGCCATTGAAGAAGCCGCCTCCGCCGGTTTACAGAGCATGGAGCATCTAATCCTTCTCTTATCCAAACAACAACACTCCCAAACTCTTAATAACAATCTCAATTACTCTGGCCTCACCGATTTCACCGTCTCCAAATTCAAACGATTGATTTCCCTATTAAACCGTACCGGCCACGCTAGATTCCGCCGTGGACCCTCCGATTCCCCAAATCCCGTCCTCAATTCTCTCGATCCACCTCTCAAAACCCATTTCCCTAAACCTAATTTCTCCCCTGCTTCCAAATTCCCTGATTCTAAGGATTCCACTACCACCTCTTCTTTTGTTTCCACGATCACCGGCGACGGCAGCGTTTCTAACGGCAAGGTTGATCTCTCGGTCTTTGCGACGCCGCCGGTGTCCGGTGGTAAACCACCGTTGGCGTTGAAGAGGAAGTGCGATGATAGCTCTGGATTTGGTTGTAAGGTTCCGTCGAAGCTCTGTCACTGTGCGAAGCGAAGGAAATCTGGAGTGAAGAAGACAGTAAGAGTTCCGGCGATCAGTTCTAAGATCGCTGATATACCTTCCGATGAATACTCTTGGAGAAAGTACGGTCAAAAGCCCATCAAAGGCTCACCTTATCCTAGAGGGTATTATAGATGCAGCACCGTCAAAGGATGTCCGGCGAGGAAAAAGGTGGAAAGAGCTCGTGACGATCCGACGATGCTCCTCGTAACTTACGACGGAGATCACCGTCACCCGCACCCTACGGTGACCGATGCCAGCGTGGGTGTCGTTTCCCAGAAGAGTTGA 837 50.54 MAVDLAAFPAKMDDQTAIEEAASAGLQSMEHLILLLSKQQHSQTLNNNLNYSGLTDFTVSKFKRLISLLNRTGHARFRRGPSDSPNPVLNSLDPPLKTHFPKPNFSPASKFPDSKDSTTTSSFVSTITGDGSVSNGKVDLSVFATPPVSGGKPPLALKRKCDDSSGFGCKVPSKLCHCAKRRKSGVKKTVRVPAISSKIADIPSDEYSWRKYGQKPIKGSPYPRGYYRCSTVKGCPARKKVERARDDPTMLLVTYDGDHRHPHPTVTDASVGVVSQKS 278
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 25661251 25662660 - CmPI595203_06g014390.1 Cmu06g1439 419099
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu06g1439 278 MobiDBLite consensus disorder prediction 255 278 - -
Cmu06g1439 278 MobiDBLite consensus disorder prediction 75 122 - -
Cmu06g1439 278 Pfam WRKY DNA -binding domain 205 262 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu06g1439 278 SUPERFAMILY WRKY DNA-binding domain 201 264 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu06g1439 278 Gene3D WRKY domain 190 265 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu06g1439 278 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 17 267 IPR044810 GO:0003700(InterPro)
Cmu06g1439 278 FunFam WRKY transcription factor 65 187 264 - -
Cmu06g1439 278 Pfam Plant zinc cluster domain 158 201 IPR018872 -
Cmu06g1439 278 SMART WRKY_cls 203 263 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu06g1439 278 ProSiteProfiles WRKY domain profile. 198 264 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu05g0143 Cmu-Chr5:1251759 Cmu06g1439 Cmu-Chr6:25661251 1.20E-27 dispersed
Cmu05g2698 Cmu-Chr5:35481369 Cmu06g1439 Cmu-Chr6:25661251 1.80E-69 dispersed
Cmu06g1439 Cmu-Chr6:25661251 Cmu07g0127 Cmu-Chr7:1121964 3.50E-39 dispersed
Cmu06g1439 Cmu-Chr6:25661251 Cmu05g2081 Cmu-Chr5:30426329 4.50E-55 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6414 PF03106 WRKY 1.20E-25 CL0274 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu06g1439 - - - 0.0