Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmu06g1449 | ATGGGAGATCATCAAGATGAGGTATGCAATATCAGCTGGCTTAGCCTTGGTTTGGGATTTGGTGAATATGTCCCAAAAAAGATGCAAAAAATCAACAATAAGCAGCAGCAGCAGCAACAACAACAACTCTCTTTCACTCTCATTCCAAAAGAAGAATTGGGTATTAACAATAACGACGACGACGACGCCAACAACAACATCAATATGGAAATTGACGATGAAGCTAATTCAAGTGAAGAAGATGATCATCATTTGATGAAGAGAATTAGAAGCAATAATAATATTGTTAATTATGATCAAGATTCCTCCTTTGGAATTAGAAGATCATCATCAGATCATCATCATCATCAGTACACCAACAACAACAACAATATTATTACTACTAATCATAATTATAAGGGGATTAGTAGTAGTAGTGGATCAGAATTAAGGGAGAGAAAAAAGCTTAGGCTTTCCAAAGAACAATCCACTTTGCTGGAAGAAAGCTTCAAACTTCACACCACTTTGAATCCGGCTCAGAAACAGGCACTTGCCCAACAATTAAACCTCAAAACTCGACAAGTGGAAGTTTGGTTTCAAAACAGACGTGCAAGGACGAAATTGAAACAAACAGAAGTAGATTGTGAGTTTTTGAAGAAATGTTGTGAAAGATTAAACGAAGAAAACCGAAGGTTGAAGAAAGAATTGCATGAATTAAGATCCCTTAAACTTGGAGCTTCACAATTGTACATTCAGCTGCCTAAGGCGGCCACACTCACAATTTGCCCTTCATGCGACAAAATTACAAGGACGGCCGCCGCCAACGCCGCCGCCGTCGACGCTAATTCTCCGCCACAATAA | 840 | 38.93 | MGDHQDEVCNISWLSLGLGFGEYVPKKMQKINNKQQQQQQQQLSFTLIPKEELGINNNDDDDANNNINMEIDDEANSSEEDDHHLMKRIRSNNNIVNYDQDSSFGIRRSSSDHHHHQYTNNNNNIITTNHNYKGISSSSGSELRERKKLRLSKEQSTLLEESFKLHTTLNPAQKQALAQQLNLKTRQVEVWFQNRRARTKLKQTEVDCEFLKKCCERLNEENRRLKKELHELRSLKLGASQLYIQLPKAATLTICPSCDKITRTAAANAAAVDANSPPQ | 279 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 25754493 | 25756086 | + | CmPI595203_06g014490.1 | Cmu06g1449 | 419109 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmu06g1449 | 279 | Gene3D | - | 137 | 207 | - | - | |
Cmu06g1449 | 279 | Coils | Coil | 201 | 235 | - | - | |
Cmu06g1449 | 279 | ProSitePatterns | 'Homeobox' domain signature. | 177 | 200 | IPR017970 | GO:0000981(InterPro)|GO:0006355(InterPro) | |
Cmu06g1449 | 279 | MobiDBLite | consensus disorder prediction | 116 | 139 | - | - | |
Cmu06g1449 | 279 | CDD | homeodomain | 146 | 203 | IPR001356 | GO:0003677(InterPro) | |
Cmu06g1449 | 279 | ProSiteProfiles | 'Homeobox' domain profile. | 142 | 202 | IPR001356 | GO:0003677(InterPro) | |
Cmu06g1449 | 279 | SMART | halz | 202 | 245 | IPR003106 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cmu06g1449 | 279 | SMART | HOX_1 | 144 | 206 | IPR001356 | GO:0003677(InterPro) | |
Cmu06g1449 | 279 | Pfam | Homeodomain | 146 | 200 | IPR001356 | GO:0003677(InterPro) | |
Cmu06g1449 | 279 | FunFam | Homeobox-leucine zipper protein 18 | 131 | 207 | - | - | |
Cmu06g1449 | 279 | Pfam | Homeobox associated leucine zipper | 202 | 235 | IPR003106 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cmu06g1449 | 279 | MobiDBLite | consensus disorder prediction | 108 | 145 | - | - | |
Cmu06g1449 | 279 | PANTHER | HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 | 31 | 267 | IPR050762 | - | |
Cmu06g1449 | 279 | SUPERFAMILY | Homeodomain-like | 134 | 203 | IPR009057 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmu06g1449 | Cmu-Chr6:25754493 | Cmu10g1637 | Cmu-Chr10:16923987 | 4.10E-40 | dispersed | |
Cmu06g1449 | Cmu-Chr6:25754493 | Cmu09g0364 | Cmu-Chr9:3512101 | 4.90E-41 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
6415 | PF00046 | Homeodomain | 1.10E-15 | CL0123 | Cmu | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmu06g1449 | K09338 | - | csv:101203427 | 379.407 |