Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu06g1451 ATGCCTCGCCGAATACTTCAAGGAAACTCTGAAGATCAGATGAAGAGCTCTTCATCACTGCTACATGCTCCAGTTTTCTTCTTCTTTCTTGGAATGCTAGCTGTGCTGGTAATATTGTTGATTCTCCTATTGATCTTTAGGAAATCTCTCAAACAAAATAAGGTGGTGAAGTTATTAAGACAAACTGGAACAACTCAAGCATCAGCAGATTTGTTGAGCGAGAACCTGCAGTCATTAAGTTACTTTGACTTTCACACACTTAAAAAGGCAACCAAGAATTTTAATCCGACAAATCTTCTAGGCCAAGGAGGATTTGGACCCGTCTATCTGGGAACACTAGAAGATGGAAGATTGGTTGCAATAAAGAAACTTTCCCTAAACAAATCCCAACAAGGAGAACCAGAATTTCTATCAGAGGTCAGACTGATAACAAGCATCCAACACAAGAACCTTGTTCGTCTACTTGGTTGTTGCTCTGATGGGCCTCAACGGCTACTCGTGTATGAATACATGGAGAACAGGAGTTTAGATCTCATAATATATGGTGGAAGTGACCAATTCCTCAACTGGAATACCAGATTGAAGATTATCAGAGGCATTGCCAAAGGGTTGCAGTACCTACATGAGGATTCCCATCTAAGAATTATTCACCGAGACATCAAAGCAAGCAACATTCTTCTTGATGACAAATTTCAACCAAAGATTGGTGATTTTGGGCTGGCCAGGTTCTTCCCTGATGACCAAGCTTACCTTAGCACTACATTTGCTGGAACTCTAGGTTACACAGCGCCGGAATATGCAATTAGGGGAGAACTGTCAGAGAAGGCAGATGTATATAGTTTTGGAGTTCTTGTGCTTGAAATCATCAGTGGCAGGAAAAACACAAATCTTTCTTTACCAACCGAAATGCAGTATCTTCCTGAATATGCATGGAAACTATATGAGAGATCTGCACTCACCGAACTAGTGGATCCAAGGATGAAGGACGGTGGATATGTGGAGAAGAATGTAGCACACGCAATTCATGTTGCTTTGTTATGCCTTCAACCACATGGCAATCTAAGACCTGCAATGTCTGAGATTGTTGCGATGCTAACATACAAATTTGAAATCGTTCAAACGCCTTTGAAACCAGCTTTCTTGGAAAGAAGGCATAGAAGGAACAAAGATCTCTCGTTGACTAATTATGCAGAAAACACTCCATCTCCTTTACAGTGA 1218 40.97 MPRRILQGNSEDQMKSSSSLLHAPVFFFFLGMLAVLVILLILLLIFRKSLKQNKVVKLLRQTGTTQASADLLSENLQSLSYFDFHTLKKATKNFNPTNLLGQGGFGPVYLGTLEDGRLVAIKKLSLNKSQQGEPEFLSEVRLITSIQHKNLVRLLGCCSDGPQRLLVYEYMENRSLDLIIYGGSDQFLNWNTRLKIIRGIAKGLQYLHEDSHLRIIHRDIKASNILLDDKFQPKIGDFGLARFFPDDQAYLSTTFAGTLGYTAPEYAIRGELSEKADVYSFGVLVLEIISGRKNTNLSLPTEMQYLPEYAWKLYERSALTELVDPRMKDGGYVEKNVAHAIHVALLCLQPHGNLRPAMSEIVAMLTYKFEIVQTPLKPAFLERRHRRNKDLSLTNYAENTPSPLQ 405
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 25773715 25775739 + CmPI595203_06g014510.1 Cmu06g1451 419111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu06g1451 405 ProSitePatterns Serine/Threonine protein kinases active-site signature. 215 227 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu06g1451 405 Gene3D Transferase(Phosphotransferase) domain 1 171 374 - -
Cmu06g1451 405 SUPERFAMILY Protein kinase-like (PK-like) 74 366 IPR011009 -
Cmu06g1451 405 FunFam Cysteine-rich receptor-like protein kinase 10 59 170 - -
Cmu06g1451 405 Pfam Protein kinase domain 97 294 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu06g1451 405 FunFam Cysteine-rich receptor-like protein kinase 2 171 373 - -
Cmu06g1451 405 SMART serkin_6 94 367 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu06g1451 405 CDD STKc_IRAK 100 366 - -
Cmu06g1451 405 Gene3D Phosphorylase Kinase; domain 1 64 170 - -
Cmu06g1451 405 ProSiteProfiles Protein kinase domain profile. 94 370 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu06g1451 405 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 32 388 IPR052059 GO:0004674(PANTHER)|GO:0006468(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu06g1451 Cmu-Chr6:25773715 Cmu09g2157 Cmu-Chr9:37667281 9.10E-89 dispersed
Cmu06g1451 Cmu-Chr6:25773715 Cmu05g2600 Cmu-Chr5:34680157 4.10E-81 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75625 PF00069 Pkinase 9.30E-47 CL0016 Cmu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu06g1451 - - - 0.0