Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu06g1453 ATGTACATTCTTATAACTGTTAGATCCACGATATCGGTTGGCTCCGACCTGATCCGACCCTCGAAAAGCCCCCAACATCAGTCACGTGCTAGGTTACCTCCGGGGCCCACATTCACTTCTGCCACGTCACCATCCTCCCTTCTACAGTACATGGGCGCCCTTCCCAATCCCTTCTCCTTCTTCTTCTCTCTCTTCTCTCTAGTTTTCCTCTTCACCGCCGTCTCACCCGCAACTTCTTCCACCAGCCACCGACTTCTTAAGCTTATCCTGCCCCACCCTTTAAAGGAAACTGTTTTTGTTGCTTCTCCTTCTCCGCCGCCACCGCCGTCGTTTCCTTCTGCTCCTCCTCCCGAGGAGAAGCCGGTGTACTCTTCATTCCGGCCAAGCATGGCGGTGGTGGTGGGTGTTCTGACCACCACTTTCTCCATCACGTTTCTTCTCCTTTTATACGCCAAGCACTGCAAGCGTGGGAATGCGGTGGTGGTTGGTTACTCGATGCGTCCCAATACGATGATGGGTGTTCCGAGCTTCTCGACGAGGAAGAACTCCGGCATCGACCAGGCCGTGATCGAATCGTTGCCGATTTTCCGATTTGGGTCGTTGAGTGGGCAAAAGGAAGGCCTGGAATGCGCCGTTTGTCTCAACAGATTCGAGCCGACGGAAGTTCTGAGACTTCTCCCTAAATGCAAACACGCCTTCCATGTCGAATGCGTCGATACTTGGCTCGACGCTCACTCCACTTGCCCTCTATGTCGCTACAGAGTCGACCCAGAGGACGTCTTATTAGTCGAAGACGTCAATATATTTCTCCACAACCCACCACCTCCTCCGCCACGGGGATCGAATTCCAAGGATGTTGTGTTGAACTTAGAACAGGGAAGAGGAAGCGGAAAGGCTGGATCCGGGAGAGTCTCCGGCAGACACTCGTCTGTCGGCGAGAAGAGGACAGGGGAGTCCAGTTACCGTGATCCAGCATTGTTGAGACGGTCACTCGACAGCAAGAGAACCGAAACGGTAGCTGTCGGATGCTTCGATCGGCACCGGAAGGACGGGCTACTTTTGCCGGAGGAGAAAACAAATCAGAATCAGAATCAGAATCAGAACAGATTGGAGCACAGGATCATAGTGTCACCGAGGCCGCCGGTACTGGTACAAGGGCAACAGAGATGGAGCGATGTACAAGCTTCGGATCTGTTGTATCTACGGTCAGAAATGATAATATCTGACAGCCGCAGATTTTCGGTAGCTTCATTACCACCGGAATTAAAGAGACAGCGACGGATGGGGATGATGGGGAAGCATGCCGGAAAAGGGACCGGGATGATGATGATGGCAGATGTGTAA 1344 52.83 MYILITVRSTISVGSDLIRPSKSPQHQSRARLPPGPTFTSATSPSSLLQYMGALPNPFSFFFSLFSLVFLFTAVSPATSSTSHRLLKLILPHPLKETVFVASPSPPPPPSFPSAPPPEEKPVYSSFRPSMAVVVGVLTTTFSITFLLLLYAKHCKRGNAVVVGYSMRPNTMMGVPSFSTRKNSGIDQAVIESLPIFRFGSLSGQKEGLECAVCLNRFEPTEVLRLLPKCKHAFHVECVDTWLDAHSTCPLCRYRVDPEDVLLVEDVNIFLHNPPPPPPRGSNSKDVVLNLEQGRGSGKAGSGRVSGRHSSVGEKRTGESSYRDPALLRRSLDSKRTETVAVGCFDRHRKDGLLLPEEKTNQNQNQNQNRLEHRIIVSPRPPVLVQGQQRWSDVQASDLLYLRSEMIISDSRRFSVASLPPELKRQRRMGMMGKHAGKGTGMMMMADV 447
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 25782253 25784030 - CmPI595203_06g014530.1 Cmu06g1453 419113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu06g1453 447 ProSiteProfiles Zinc finger RING-type profile. 210 252 IPR001841 -
Cmu06g1453 447 FunFam RING-H2 finger protein ATL43 185 259 - -
Cmu06g1453 447 Pfam Ring finger domain 209 252 IPR001841 -
Cmu06g1453 447 SMART ring_2 210 251 IPR001841 -
Cmu06g1453 447 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 184 259 IPR013083 -
Cmu06g1453 447 CDD RING-H2_EL5-like 209 252 - -
Cmu06g1453 447 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 107 414 - -
Cmu06g1453 447 MobiDBLite consensus disorder prediction 292 329 - -
Cmu06g1453 447 MobiDBLite consensus disorder prediction 18 38 - -
Cmu06g1453 447 MobiDBLite consensus disorder prediction 308 329 - -
Cmu06g1453 447 SUPERFAMILY RING/U-box 190 257 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu06g0929 Cmu-Chr6:12969895 Cmu06g1453 Cmu-Chr6:25782253 4.40E-41 dispersed
Cmu06g0930 Cmu-Chr6:12972436 Cmu06g1453 Cmu-Chr6:25782253 7.90E-35 dispersed
Cmu06g1453 Cmu-Chr6:25782253 Cmu08g1074 Cmu-Chr8:23031611 3.10E-21 dispersed
Cmu06g1453 Cmu-Chr6:25782253 Cmu06g1351 Cmu-Chr6:24707302 1.50E-23 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu06g1453 K19041 - csv:101203916 625.55