Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu06g1467 ATGGCACGCCCATCTACCCCGCCCCCCACCGCCCTCTTTCTCATTCTCATTCTCATCATCTCATTGGTGGAGCAGCTCATTGTTTCTTGCACCGCTTCTACCGATGCAGAAGCGCTTCTTAAGTTCAAGAGCTCTCTTGAAATTACCAATGATGCATTGGCGAATTGGGCTACGGGGTCTTCCCCTTGCTCCGGCGATAAGGCGAATTGGATCGGTATTCTTTGCGAGAAGGGAAATGTTTGGGGATTGAAGCTTGAGAATATGGGGCTCAAGGGGAATATTGATATTGAGTCCCTTGAAGGGGTGCCTCATTTAAGGACAATTAGTCTTATGAACAATCATTTTCAAGGGTCTTTGCCTGATGTAAAGAGACTTGGGGCATTGAAATCTTTGTATTTGTCAAGAAATCATTTCTCAGGGAACATTCCTGGGGATTCATTTTCAAGTATGTTGTCTTTGAAGAAAGTGCATTTGGCTCAGAATGAGTTGGAAGGTCAAATTCCTTGGTCTTTGGTTGAATTGCCTCGTTTGTTGGAGTTGAGGCTTGAAGGAAATAAGTTTTCTGGCCAAATTCCTCATTTTCATCAAAACACAATCAAGTCCTTTAATGTCTCTAATAATGACCAACTTCATGGCCCAATCCCACAATCCCTTTCCCACATGGATCCATCCTCCTTCTCAGGCATTGAAGGTTTATGTGGACCGCCACTTAATAAACCATGCAACACCTCAAAGATGCCATCAATTGGGAGCATTATCATGGTTTCAATAGCTGTGACATTGGCTCTGCTTGCCATTGGTGCAGGAATAGTCATCCTTAGCCGTCGGAACCAATCGTCGTCTAAAGAAGAGGATCCAGCCCATGGCAAATCTCCATGTGCTAGTGAGTTAGATCCGGGAGTCGGGTCGAAGTCACCGGACCGTGGTTCCAGCCACGGAAGCGGGTCGGGGAAACGGTCAGCCGATAGTGCTAAATTGTCATTTGTAAGAGAGGACTCAGAGAAGTTTGATTTATCAGATTTGCTTAAAGCCTCTGCAGAAATCCTAGGAAGTGGGTGCTTTGGTTCTTCTTACAAGGCAGCCTTGACCAATGGACCTGTCATGGTGGTAAAGAGGTTTAAGCAAATGAACAATGTGGATAGAGAGGAATTCCAAGAACATATGAGAAGAATTGGAAGATTGAAACACCCCAATTTGCTTCCTCTTGTGGCCTACTACTACAAAAAGGAAGAAAAACTTCTCATAACAAACTATGTTGAGAAAGGCAGCTTGGCTGTTCAACTTCATGGACATCAAGCTGTGGGTCAACCAGCCCTGGAATGGCCTGCAAGGTTGAAGATCATCAAGGGCATTGGAAAAGGTCTTAGGTATCTGTACAGTGAGCTTCCAAGTTTGATAACCCCACATGGCCATCTCAAGTCTTCAAATGTGCTTCTTAAGGCGAATTACGAGCCGCTTCTTTCGGACTACGGCCTGATACCGGTCGTGAACCAAGAGCATGCTCATGAGCTAATGGTGGCTTACAAATCGCCGGAATATTCGCAACAAGGTCGCATCACAAAGAAGACAGATGTGTGGTGCTTTGGGCTGTTGATCCTAGAGATTCTAACAGGGAAATTCCCAGCTAACTTTTTGCATCAGAACAAGAGTGGTGATGAGGAAGATTTAGCAAGTTGGGTCAAAACCATTCCTGAAAAAGAATGGAACAGCCAAGTGTTTGACAAAGAAATGGGACCAACCAAGAGCAGTGAGGGTGAAATGTTGAAACTTCTCAGGATTGCAATGGCGTGTTGCGAAAGCGACTTCGAGAAGCGGCTGGATTTACGAGAAGTCCTGGAGAAGATTGAGGAAGTAAAAGAAAAAGATGGGGATGAAGATTTCTATTCTTCATATGCAAGTGAAGCTGATATTAGATCTTCAAGAGGATTATCTGATGAACTCAACTTCACCATGTGA 1956 44.58 MARPSTPPPTALFLILILIISLVEQLIVSCTASTDAEALLKFKSSLEITNDALANWATGSSPCSGDKANWIGILCEKGNVWGLKLENMGLKGNIDIESLEGVPHLRTISLMNNHFQGSLPDVKRLGALKSLYLSRNHFSGNIPGDSFSSMLSLKKVHLAQNELEGQIPWSLVELPRLLELRLEGNKFSGQIPHFHQNTIKSFNVSNNDQLHGPIPQSLSHMDPSSFSGIEGLCGPPLNKPCNTSKMPSIGSIIMVSIAVTLALLAIGAGIVILSRRNQSSSKEEDPAHGKSPCASELDPGVGSKSPDRGSSHGSGSGKRSADSAKLSFVREDSEKFDLSDLLKASAEILGSGCFGSSYKAALTNGPVMVVKRFKQMNNVDREEFQEHMRRIGRLKHPNLLPLVAYYYKKEEKLLITNYVEKGSLAVQLHGHQAVGQPALEWPARLKIIKGIGKGLRYLYSELPSLITPHGHLKSSNVLLKANYEPLLSDYGLIPVVNQEHAHELMVAYKSPEYSQQGRITKKTDVWCFGLLILEILTGKFPANFLHQNKSGDEEDLASWVKTIPEKEWNSQVFDKEMGPTKSSEGEMLKLLRIAMACCESDFEKRLDLREVLEKIEEVKEKDGDEDFYSSYASEADIRSSRGLSDELNFTM 651
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 25943790 25946206 + CmPI595203_06g014670.1 Cmu06g1467 419127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu06g1467 651 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 30 620 IPR046959 -
Cmu06g1467 651 Gene3D Phosphorylase Kinase; domain 1 310 418 - -
Cmu06g1467 651 FunFam pollen receptor-like kinase 1 312 418 - -
Cmu06g1467 651 Gene3D Transferase(Phosphotransferase) domain 1 419 637 - -
Cmu06g1467 651 Gene3D Ribonuclease Inhibitor 34 147 IPR032675 -
Cmu06g1467 651 FunFam Nuclear pore complex protein NUP107 32 193 - -
Cmu06g1467 651 SUPERFAMILY Protein kinase-like (PK-like) 347 616 IPR011009 -
Cmu06g1467 651 ProSiteProfiles Protein kinase domain profile. 343 628 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu06g1467 651 Pfam Leucine rich repeat 128 187 IPR001611 GO:0005515(InterPro)
Cmu06g1467 651 Pfam Protein tyrosine and serine/threonine kinase 347 614 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu06g1467 651 FunFam Pollen receptor-like kinase 1 419 629 - -
Cmu06g1467 651 Pfam Leucine rich repeat N-terminal domain 33 75 IPR013210 -
Cmu06g1467 651 Gene3D Ribonuclease Inhibitor 148 242 IPR032675 -
Cmu06g1467 651 SUPERFAMILY L domain-like 31 221 - -
Cmu06g1467 651 MobiDBLite consensus disorder prediction 307 321 - -
Cmu06g1467 651 MobiDBLite consensus disorder prediction 280 324 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu06g1467 Cmu-Chr6:25943790 Cmu07g1456 Cmu-Chr7:29686262 2.60E-122 dispersed
Cmu05g2687 Cmu-Chr5:35376683 Cmu06g1467 Cmu-Chr6:25943790 9.60E-147 transposed
Cmu08g1191 Cmu-Chr8:24337715 Cmu06g1467 Cmu-Chr6:25943790 4.10E-135 transposed
Cmu10g1713 Cmu-Chr10:19825922 Cmu06g1467 Cmu-Chr6:25943790 3.50E-87 transposed
Cmu11g0135 Cmu-Chr11:1914901 Cmu06g1467 Cmu-Chr6:25943790 9.60E-106 transposed
Cmu04g1087 Cmu-Chr4:25473480 Cmu06g1467 Cmu-Chr6:25943790 1.20E-66 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75626 PF07714 PK_Tyr_Ser-Thr 4.50E-30 CL0016 Cmu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu06g1467 K28077 - csv:101213261 1100.5