Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu06g1481 ATGGCGTTCGTTGGGTTTATTGGCTTGGACGATCTTAGCCTCCAATTGGCTACTTCACTAATCCGTGCCGGTTACAGAGTCAAAGCTTTTGAGATAAATCAGGTCTGGACAGATACATTTTTGAAGTCAGGCGGAATAAGCTGTGCCAGTATTGTAGAGGCAGCGGCAGATGTTGCGGCATTGCTTGTATTGAATAGTCATTTGAATATGATTAATGATTTATCTTTTGGGGATGTTCTCAGAGGGTTGCATGAGGATGTTGTTGTTGTCCTTGTCCGTTCAACTCCACTGGGGAATGATGTCCAGAACTTGGAAAAACTTTTTACAGTTGATTACAAGATACACAATCTTGTTGATGCATATGTCTTTAAGGGTGTTTCTGAAGCTCTGGATGGTCAGCTCTTGACAGTAACCTCTGGAAGGGCAGCTGCAATTTCTAGAGCTCGACCTTTTCTATCAGCTATGTGTGGAAAGCTTTTCATTTTTGAAGGTGAAGTTGATGCTGGAAGTAGAACAAATATGGTAATTGAGCTCCTTAAAGGAATTCATTTTGTGGCTTCGCTGGAAGCTATTTCCCTGGGTGTTAAAGCTGGAATTCACCCCTGGATAATCTATGACATTATTTCAAATGCTGCTGGGAATTCATGGGTTTTCAAGAATTATGTTCCCCACTTGTTAAAGGGTGATATTAGACCTGAGTTGTTGAGAAGTTTGGTTCAAGCTATGGGGATTGTCATGGATAAGGCCAAGTCGCACACTTTTCCTCTTCCTCTCCTAGCAGTTACTCATCAGCAACTTATGCTGGGTTCTTCCCATGGCTATGGAGATGAGGATGGCTTGTTAGAACAGGCGTGGAAAAGTGCATATGGAGTAAGTATTTCAAATGCAGCTAATACAGAAGTTTACAGCCCTGAGCAACTAGCCAATGAAATAACTTCTAAATCAAGTTCTGTTAATCGAGTGGGTTTCATTGGTCTTGGTGCAATGGGATTTGGCATGGCAACTCACCTTATCAGATCAGCTTTTTGTGTGACTGGTTATGATGTGTTTAAACCAACCCTAACTAAATTCACTGATGCTGGTGGCTTGATTGGAAACTCGCCTGCAGAAGTTAGTAAAGATGTTGAAGTGCTCGTAATTATGGTGACAAATGAAGCACAAGTGGAGAGCGTTCTGTATGGGGAAGCTGGGGCTATCTCTGCCCTTCCATATGGAGCTTCGATTATTCTATCATCTACTGTTTCTCCTGGATATGTGCGGCAACTAGAACAACGCTTGGGAAATGAGGGCAAAAATTTGAAATTGGTTGATGCTCCTGTTTCTGGTGGTGTTCAAAGGGCCTCAAAGGGAGCCCTTACGATAATGGCCTCGGGGACAAATGAAGCTCTTAGGAGCGCTGGTTCAGTCCTCTCAGCCTTAAGTGAGAAGCTTTATGTAATTAAAGGAGTCTGCGGGGCAGGAAGTGGTGTGAAAATGGTAAATCAATTGCTTGCTGGAGTTCATATAGCATCGGGTGCAGAGGCAATGGCATTTGGAGCTCGACTTGGTCTCAATACTCGAATTTTATTTGACGTCATCGTAAATAGTCAGGGAACGTCCTGGATGTTTGAAAACCGAGTTCCGCATATGCTGGACGATGATTATACACCATACTCTGCACTTGACATCTTTGTGAAGGACCTGGGCATTGTTTCTCGGGAATGTGCATCTCATAAAGTTCCTCTACACTTATCCGTGACTGCACATCAATTGTTTCTGGCAGGTTCTGCTGCGGGCTGGGGTCGTCAAGATGATGCTGGAGTAGTAAAGGTTTATGAGACGCTTACAGGTGTCAAGGTTAAAGGAAAGCCTCCCACTCTTAAGAAAGAAGCTGTATTGAGGTCTCTTCCACCTGAATGGCCGCAAGATGTGATTGCTGATATTCAACAACTGAATGAAAGGAATTCAAAGATTTTGGTTGTGCTGGACGATGATCCAACGGGAACCCAAACTGTTCATGATATTGATGTTTTAACTGAATGGTCCCTTGATTCACTTATTGAGCAATTTCGTAAAAAGCCGAAATGCTTTTTTATATTGACCAACTCAAGGTCACTGAGCTCTGAAAAGGCTGGGGCATTAGTTAAACAAATCTGCACTAATTTACGTGCTGCATCTGAGTGTGTCAAGCATAGTGACTACATGGTAGTTTTGAGAGGTGATTCAACCTTACGAGGTCATTTTCCTGAGGAAGCCGATGCTGCTATGTCAGTGTTAGGTGTAGTGGATGCATGGATCATCTGCCCGTTCTTTTTCCAAGGAGGCCGTTATACTGTTGACGATATACACTATGTTGCAGATTCTGATGAGCTTATTCCTGCAGGGGACACTGAGTTCGCAAAAGATGCTACTTTTGGTTATAAATCTTCAAATCTTCGTGAGTGGGTTGAAGAGAAAACAGCTGGACGCATACAAGCTGGCACTGTTACCTCCATTTCTATTCAACTTTTAAGAAAGGGTGGCCCAGATGCTGTTTGCGAGCACCTATGCAGCTTAGAGAAGGGAATGACATGTATAGTTAATGCCGCTAGTGAAAGGGATATGGCAGTCTTTGCAGCTGGAATGATTAAGGCAGAAATGAAGGGCAAGAATTTCTTATGCCGAACTGCTGCCAGTTTTGTATCAGCCAGGGTTGGGATCACTCCAATAGCCCCTCTTTTGCCAAAGGATGTTGGAATTGATAAAGAGAGAAATGGTGGTCTTATTATTGTGGGTTCATATGTTCCAAAAACTACTAAACAGGTTCAAGAGTTGAAGTTGCGATGTGGCCCATTTTTAAGATGTATTGAGGTTTCTGCTGCTAAACTTTCCATGAGTACAGAGGAAGAGAGGGAGGAGGAAATTAGAAAAGCAGCTATGTTTGCTGATATTTATCTCAGGGCTCGTAAAGATACTCTGATTATGACTAGTAGAGAACTTATCAGGGGAAAAAGTCCCCTGGAGAGTTTAGAAATCAACATCAAAGTAAGTGCTGCGCTAGTGGAAATAGTTCAACAGATTACTACAAAACCTCGTTACATCCTTGCAAAGGGTGGAATCACCTCATCAGACATTGCTACAAAGGCTCTTGGAGCAAAATGTGCTAGGATAATTGGACAGGCCTTTTCTGGGGTTCCCTTGTGGCAACTAGGCCATGAAAGTAGACATCCTGGAGTTCCCTACATTGTTTTCCCAGGTAATGTTGGAAGCAGTGAAGCACTAGCAGAAGTAGTCAGTACTTGGGCTCTTCCTGCCAGACTTTCCTCCTCAAAAGAGATTCTTCTTAGTGCAGAACAAGGTGGGTATGCAGTGGGAGCTTTCAATGTCTATAATTTGGAAGGAGTTCAGGCTGTTGTTGCTGCTGCTGAAGAACAACACAGTCCTGCCATATTACAG 3414 43.15 MAFVGFIGLDDLSLQLATSLIRAGYRVKAFEINQVWTDTFLKSGGISCASIVEAAADVAALLVLNSHLNMINDLSFGDVLRGLHEDVVVVLVRSTPLGNDVQNLEKLFTVDYKIHNLVDAYVFKGVSEALDGQLLTVTSGRAAAISRARPFLSAMCGKLFIFEGEVDAGSRTNMVIELLKGIHFVASLEAISLGVKAGIHPWIIYDIISNAAGNSWVFKNYVPHLLKGDIRPELLRSLVQAMGIVMDKAKSHTFPLPLLAVTHQQLMLGSSHGYGDEDGLLEQAWKSAYGVSISNAANTEVYSPEQLANEITSKSSSVNRVGFIGLGAMGFGMATHLIRSAFCVTGYDVFKPTLTKFTDAGGLIGNSPAEVSKDVEVLVIMVTNEAQVESVLYGEAGAISALPYGASIILSSTVSPGYVRQLEQRLGNEGKNLKLVDAPVSGGVQRASKGALTIMASGTNEALRSAGSVLSALSEKLYVIKGVCGAGSGVKMVNQLLAGVHIASGAEAMAFGARLGLNTRILFDVIVNSQGTSWMFENRVPHMLDDDYTPYSALDIFVKDLGIVSRECASHKVPLHLSVTAHQLFLAGSAAGWGRQDDAGVVKVYETLTGVKVKGKPPTLKKEAVLRSLPPEWPQDVIADIQQLNERNSKILVVLDDDPTGTQTVHDIDVLTEWSLDSLIEQFRKKPKCFFILTNSRSLSSEKAGALVKQICTNLRAASECVKHSDYMVVLRGDSTLRGHFPEEADAAMSVLGVVDAWIICPFFFQGGRYTVDDIHYVADSDELIPAGDTEFAKDATFGYKSSNLREWVEEKTAGRIQAGTVTSISIQLLRKGGPDAVCEHLCSLEKGMTCIVNAASERDMAVFAAGMIKAEMKGKNFLCRTAASFVSARVGITPIAPLLPKDVGIDKERNGGLIIVGSYVPKTTKQVQELKLRCGPFLRCIEVSAAKLSMSTEEEREEEIRKAAMFADIYLRARKDTLIMTSRELIRGKSPLESLEINIKVSAALVEIVQQITTKPRYILAKGGITSSDIATKALGAKCARIIGQAFSGVPLWQLGHESRHPGVPYIVFPGNVGSSEALAEVVSTWALPARLSSSKEILLSAEQGGYAVGAFNVYNLEGVQAVVAAAEEQHSPAILQ 1138
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 26091025 26109009 + CmPI595203_06g014810.1 Cmu06g1481 419141

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu06g1481 1138 Pfam Fructose-bisphosphate aldolase class-II 1095 1138 IPR000771 GO:0005975(InterPro)|GO:0008270(InterPro)|GO:0016832(InterPro)
Cmu06g1481 1138 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 320 483 IPR036291 -
Cmu06g1481 1138 Pfam NAD binding domain of 6-phosphogluconate dehydrogenase 4 160 IPR006115 GO:0050661(InterPro)
Cmu06g1481 1138 Pfam NAD binding domain of 6-phosphogluconate dehydrogenase 320 478 IPR006115 GO:0050661(InterPro)
Cmu06g1481 1138 Pfam Sugar-binding N-terminal domain 652 889 IPR010737 -
Cmu06g1481 1138 SUPERFAMILY 6-phosphogluconate dehydrogenase C-terminal domain-like 168 278 IPR008927 -
Cmu06g1481 1138 Gene3D - 904 1086 IPR042213 -
Cmu06g1481 1138 Gene3D - 651 891 IPR037051 -
Cmu06g1481 1138 PANTHER 3-HYDROXYISOBUTYRATE DEHYDROGENASE-LIKE 1, MITOCHONDRIAL-RELATED 3 155 - -
Cmu06g1481 1138 SUPERFAMILY YgbK-like 652 1084 - -
Cmu06g1481 1138 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 4 159 IPR036291 -
Cmu06g1481 1138 ProSitePatterns 3-hydroxyisobutyrate dehydrogenase signature. 323 336 IPR002204 GO:0016491(InterPro)
Cmu06g1481 1138 Pfam Nucleotide-binding C-terminal domain 914 1080 IPR031475 -
Cmu06g1481 1138 SUPERFAMILY Aldolase 1095 1138 - -
Cmu06g1481 1138 Gene3D - 2 163 - -
Cmu06g1481 1138 Gene3D - 313 481 - -
Cmu06g1481 1138 Gene3D - 168 283 IPR013328 -
Cmu06g1481 1138 Gene3D Aldolase class I 1089 1138 IPR013785 -
Cmu06g1481 1138 Pfam NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 485 605 IPR029154 GO:0051287(InterPro)
Cmu06g1481 1138 Pfam NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 168 278 IPR029154 GO:0051287(InterPro)
Cmu06g1481 1138 Gene3D - 482 614 IPR013328 -
Cmu06g1481 1138 SUPERFAMILY 6-phosphogluconate dehydrogenase C-terminal domain-like 485 612 IPR008927 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu06g1481 - - - - 0.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g180 . . Bda06g00824 . . . . Bma12g01248 . . . . Car10g00316 . . . . Bhi02g00155 . . . Hepe09g0400 . . Cla06g01412 Cam06g1565 Cec06g1625 Cco06g1617 Clacu06g1527 Cmu06g1481 Cre06g2290 . . . Cone19ag0357 . . . . . Blo15g00055 . . Bpe07g01052 . . . . Cmo10g00361 . . . . . . . . . . . . . . . . . . . . . Lsi06g01272 Csa01g00444 Chy02g02301 Cme02g01672
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009138 1 5 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 34