Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu06g1488 ATGCCGGATACACCAACATCGCCGAAGAGCGGTGGCCGTCTGGTGCTAATGGAGAATCTGCTCGGACTTCTCCGTATTCGCATCATTCGTGGTGTTAATCTTGCTGTTCGTGATGTTCGCAGTAGTGATCCTTATGTTGTCATCAAGATGGGAAAGCAAAAACTGAAGACAAGGGTGATAAAGAAGGATGTTAATCCTGTATGGAATGAAGATCTAACTCTTTCTATCAGTGATCCGAATCTTCCAATTAAGCTGACCGTTTACGATCACGACACATTTAGCAAGGATGATAAAATGGGATATGCTGAGTTCGATATCAAAGCATTTATGGAAGCTCTGAAGATGAACTTGAAAAATCTTCCCAGTGGAACTACTATCTCACGAATGCTACCGGCCAGGCAAAACTGTCTCGCTGAAGAGAGCTGTGTCGTCTGGAAAGATGGTAAAGTAGTCCAAGATATCTACCTTAGATTGAAAAATGTCGAATGCGGAGAAGTCGAAATTCAGTTGCAGTGGATTGATCTTCCGAACCCCAAAGGCTGA 543 43.46 MPDTPTSPKSGGRLVLMENLLGLLRIRIIRGVNLAVRDVRSSDPYVVIKMGKQKLKTRVIKKDVNPVWNEDLTLSISDPNLPIKLTVYDHDTFSKDDKMGYAEFDIKAFMEALKMNLKNLPSGTTISRMLPARQNCLAEESCVVWKDGKVVQDIYLRLKNVECGEVEIQLQWIDLPNPKG 180
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 26154725 26156994 + CmPI595203_06g014880.1 Cmu06g1488 419148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu06g1488 180 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 22 166 IPR035892 -
Cmu06g1488 180 CDD C2_ArfGAP 21 164 - -
Cmu06g1488 180 ProSiteProfiles C2 domain profile. 8 119 IPR000008 -
Cmu06g1488 180 Pfam C2 domain 22 109 IPR000008 -
Cmu06g1488 180 Gene3D C2 domain 18 179 IPR035892 -
Cmu06g1488 180 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 4 17 178 IPR044562 -
Cmu06g1488 180 SMART C2_3c 23 118 IPR000008 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g1077 Cmu-Chr1:17200578 Cmu06g1488 Cmu-Chr6:26154725 2.20E-33 dispersed
Cmu01g2459 Cmu-Chr1:36550089 Cmu06g1488 Cmu-Chr6:26154725 1.10E-34 dispersed
Cmu06g1488 Cmu-Chr6:26154725 Cmu08g1362 Cmu-Chr8:25818043 1.70E-10 dispersed
Cmu05g1214 Cmu-Chr5:12500559 Cmu06g1488 Cmu-Chr6:26154725 1.40E-67 transposed
Cmu07g0642 Cmu-Chr7:9786660 Cmu06g1488 Cmu-Chr6:26154725 1.80E-49 transposed
Cmu04g1098 Cmu-Chr4:25582353 Cmu06g1488 Cmu-Chr6:26154725 2.00E-73 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu06g1488 - - - 0.0