Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu06g1492 ATGTGGACGTTGGGTTACGATGACAATGGCGGAGAATTTTGCTTCTCTGAGGCCTTTAATGGCGGTCGCAAGCTTCGACCTCTCGTCCCTCGCCCTTTGCCTTCCTTTCATGCCAATGGCGCTAACTTCTCTTCTCAATATTACCATCTTGGTAATCATTTGAATGAGGATAACAAGAGAGGGTTGTTGAATAATGGAAAGAGTTGGTCGGGTCCAACACCAGTAGTAGTGAGCTCATCAAGATGGAATCCAACGGCGGAGCAGTTGAGAATTCTGGAGGAGCTTTACCGGCGAGGGACACGAACGCCGTCCGCCGACCAAATCCAACACATCACCGCCCAGCTCCGCCGCTACGGCAAAATAGAAGGCAAAAACGTTTTCTATTGGTTTCAAAATCACAAGGCTAGAGAGCGCCAAAAACGACGCCGTCAAACTGCCGCTGAACAAACCAAATATTCTGAGGCAGAAAAAGGGTACGAAATTGAAGAGACAAAGACGAAGTGTAGGTGGGGAAGGGCAACACCTCCATCCTCTATAATCTCCTCTACTCTACTTTCAAAGGAATGGGCAGAAACACAGAGAAAAACAAAAGTAGTTGAATTGGAAGAAGAAGAAGAAGAAGAAACAAGAAGAGAGTCAGTGGAAAGAGAAGAGACATGGAATTACAATAATATATTGAATTGTCAACTCATAAACCCTACAAGGAAGACCCAACATCTAAACAGTACCATCGAATCCAGCAATGGAGACCGACGACACAATGTCGTTGACAACAACAATGACGACGAGGAATCTAAAATGATGACACTTCAGTTGTTTCCACTCCGTAGCACAAAGTTTTACAAATACGACAGCGAGAGAGAGGGACGACGAGATGACCAACCCGAGATCACGTCGGATTCAGACATGATCAAAAGCTCCTCCTTGTCTCCAAATTGTAGTTTCCAGTTCTTTGAGTTTCTTCCACTCAAAAACTAA 978 44.99 MWTLGYDDNGGEFCFSEAFNGGRKLRPLVPRPLPSFHANGANFSSQYYHLGNHLNEDNKRGLLNNGKSWSGPTPVVVSSSRWNPTAEQLRILEELYRRGTRTPSADQIQHITAQLRRYGKIEGKNVFYWFQNHKARERQKRRRQTAAEQTKYSEAEKGYEIEETKTKCRWGRATPPSSIISSTLLSKEWAETQRKTKVVELEEEEEEETRRESVEREETWNYNNILNCQLINPTRKTQHLNSTIESSNGDRRHNVVDNNNDDEESKMMTLQLFPLRSTKFYKYDSEREGRRDDQPEITSDSDMIKSSSLSPNCSFQFFEFLPLKN 325
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 26204159 26208152 - CmPI595203_06g014920.1 Cmu06g1492 419152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu06g1492 325 SMART HOX_1 77 144 IPR001356 GO:0003677(InterPro)
Cmu06g1492 325 Gene3D - 79 147 - -
Cmu06g1492 325 FunFam WUSCHEL-related homeobox 4 79 146 - -
Cmu06g1492 325 MobiDBLite consensus disorder prediction 284 299 - -
Cmu06g1492 325 ProSiteProfiles 'Homeobox' domain profile. 85 140 IPR001356 GO:0003677(InterPro)
Cmu06g1492 325 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 74 320 IPR044555 GO:0003700(InterPro)|GO:0099402(InterPro)
Cmu06g1492 325 MobiDBLite consensus disorder prediction 284 308 - -
Cmu06g1492 325 Pfam Homeodomain 80 139 IPR001356 GO:0003677(InterPro)
Cmu06g1492 325 CDD homeodomain 81 141 IPR001356 GO:0003677(InterPro)
Cmu06g1492 325 SUPERFAMILY Homeodomain-like 79 144 IPR009057 -
Cmu06g1492 325 Coils Coil 198 218 - -
Cmu06g1492 325 MobiDBLite consensus disorder prediction 243 263 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu06g1492 Cmu-Chr6:26204159 Cmu08g1547 Cmu-Chr8:27305111 7.00E-23 dispersed
Cmu01g1965 Cmu-Chr1:32916834 Cmu06g1492 Cmu-Chr6:26204159 3.00E-23 transposed
Cmu11g0636 Cmu-Chr11:6971518 Cmu06g1492 Cmu-Chr6:26204159 8.10E-22 transposed
Cmu04g1103 Cmu-Chr4:25643002 Cmu06g1492 Cmu-Chr6:26204159 2.20E-42 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6416 PF00046 Homeodomain 2.20E-19 CL0123 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu06g1492 - - - 0.0