Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu06g1499 ATGCAAATGGCTGGTGGTAATCAAGATATGGCAGTTCACTCTCTTGCATCTAAACTTTCTGTAGTTTCAGAACATGAACCTGAACAATGTGGCAATAATAATAATAATGCCACTAATAATCACCAACAAAGACCTTGCTTTGATCCTTCTCTTGTTTCTCCCAAGGCCGTGCCGCCTATCTCGGTGGCTGCGGAGAGTGATCAAGCTCTCCGTCGACCTCGGGGGCGGCCAGCCGGGTCCAAAAACAAGCCAAAACCACCCATTATTGTTACCCGAGATAGCGCAAATGCCCTCCGAGCTCATGCCATTGAGGTTAGCTCTGGCTGTGATGTCAATGAGAGCCTCTCCAACTTCGCTCGGAGAAAGCAGCGTGGTGTTTGCATTCTTAGTGGTAGCGGGTGTGTCACTAATGTCACGCTCCGCCAGGCTGCCTCCTCTGGCGCTATTGTCACTCTCCATGGCCGCTTTGAGATTCTTTCCATGCTGGGGTCGATCTTGCCACCACCGGCACCGTCGGGAATCACTGGCCTGACAATTTACTTAGCCGGTGCACAAGGGCAGGTGGTCGGTGGTGTTGTTGTGGGCGCGCTCATTGCTTCCGGTCCAGTCGTGATCATGGCGGCGACATTCATGAACGCGACATTCGACCGCCTACCATCGGACGACGAAGAAGTGGCAGCCGCCATGCATAGTCAACATTACGGTCAAAATGGGCGGAGCCACCACCACCTGGATGTTTCGGATCTGTATGGAGTGCCACAGAATTTGATCACCAATAGTAGTCTTCCGCCGGAATTATACTCTTGGGCGGCGGCTGGCAGAACCATATCAAAGACTTAA 840 52.26 MQMAGGNQDMAVHSLASKLSVVSEHEPEQCGNNNNNATNNHQQRPCFDPSLVSPKAVPPISVAAESDQALRRPRGRPAGSKNKPKPPIIVTRDSANALRAHAIEVSSGCDVNESLSNFARRKQRGVCILSGSGCVTNVTLRQAASSGAIVTLHGRFEILSMLGSILPPPAPSGITGLTIYLAGAQGQVVGGVVVGALIASGPVVIMAATFMNATFDRLPSDDEEVAAAMHSQHYGQNGRSHHHLDVSDLYGVPQNLITNSSLPPELYSWAAAGRTISKT 279
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 26272193 26273209 + CmPI595203_06g014990.1 Cmu06g1499 419159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu06g1499 279 Pfam Plants and Prokaryotes Conserved (PCC) domain 99 211 IPR005175 -
Cmu06g1499 279 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 64 240 IPR014476 GO:0003680(PANTHER)|GO:0003680(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)
Cmu06g1499 279 CDD DUF296 99 181 IPR005175 -
Cmu06g1499 279 MobiDBLite consensus disorder prediction 26 47 - -
Cmu06g1499 279 SUPERFAMILY AF0104/ALDC/Ptd012-like 95 227 - -
Cmu06g1499 279 FunFam AT-hook motif nuclear-localized protein 98 225 - -
Cmu06g1499 279 ProSiteProfiles PPC domain profile profile. 95 233 IPR005175 -
Cmu06g1499 279 Gene3D - 98 234 - -
Cmu06g1499 279 MobiDBLite consensus disorder prediction 20 88 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu06g1499 Cmu-Chr6:26272193 Cmu07g0391 Cmu-Chr7:3988582 4.00E-59 dispersed
Cmu06g1499 Cmu-Chr6:26272193 Cmu01g0336 Cmu-Chr1:3493306 7.70E-63 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu06g1499 - - - 0.0