Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmu06g1526 | ATGGCGACGCCTTTGACAGGGCTACAGCACAGGGACGGTGGCGGAGGAGTGGCCTTTTTGGCTAATTCTGTCAATAAAATGGATTCCGCCTCGTCTCCGTCGTCGCCGAAGGATTGTTTGAGGAGCTCCGAGCCACAGTCTCCGATTCTTATTTTCCTTTTCTTTCACAAAGCAATTCGCAATGAGCTTGATACGCTTCACCGGCTGGCCATGGCGTTCGCTACCGGCCAGAGAGCAGATATTCGGCCGCTATTTGAACGATACCATTTTTTGAGATCGATTTACAAACACCACTCCAATGCGGAAGACGAGGTAATTTTTCCTGCCCTTGATATTCGTGTGAAGAATGTGGCACAGACATATTCCCTTGAACACAAGGGCGAAAGTAATTTGTTTGATCATCTTTTTGAGCTTCTTAATTGTAATACACAAAATGATGAAAGCTTCCCAAGGGAGTTAGCGTCCTGCACTGGTGCCCTAAAGACATCTGTGAGCCAGCACATGGCTAAGGAAGAAGAACAGGTATTTCCCTTGCTTATAGAAAAGTTCTCCTTGGAAGAGCAGGCATCTCTCGTTTGGCAGTTCTTGTGCAGTATTCCTGTGTACATGATGGCTCAATTCCTCCCTTGGCTTTCATCATCTGTTTCACCTGATGAATTTCAGGATCTACAGAAATGTTTAATTAAGGTAGTCCCTGAGGAAAAGCTTCTTCGGCAGGTCATATTTACTTGGATGGAAGCTAGAAGTAGTGACAATGTATCAACAAGTTGGTGTGGTGATTCTCTAGTTGGATATCATACAGATCCTACTTCTGATACATCAAATCATCAAACCGGAAATGTAAATTGTGCTTGTGAATCAACCAGCCATGGGAAAAGAAAATACTTGGAGTCAAGTTCTGAGATATCGGATTATGTGGCAACTCATCCAATCAATGAAATACTGTTCTGGCATAATGCCATCAAAAGAGAGTTGAATGACATAGCTGAGGAGGCTAGGAAGATACAACTTTCTGGGAACTTTAGTAATCTATCAACTTTTAACGAGAGGTTGCAATTCATTGCTGAAGTTTGCATATTTCATAGTATTGCCGAGGACAAGGTAATCTTTCCTGCAGTAGATGGAGAATTTTCTTTTCTCCAGGAACATGCTGAAGAAGAAAGTCAATTCAATGCGTTTAGGTGCCTGATTGAAAATATTCAAAGTGCAGGGGCTAGTTCTACTTCAAGAGCTGAATTTTACGTGAAGTTGTGTTCTCATGCTGATCAAATAATGGATACCATTAAGAGGCACTTCCATAATGAAGAAGTTCAGGTTCTTCCACTTGCTAGAAAACACTTCAGTTTCAAGAGACAACGAGAATTATTGTATCAAAGCTTGTGCATGATGCCTCTGAAACTGATCGAGCGTGTCTTGCCATGGCTAGTAGGATCAGTGAAAGAAGATGAAGCTAGAGATATTCTCAAGAACATTCAATTGGCAGCTCCAGCCAAAGATACTGCTCTGGTGACTCTCTTTTCTGGTTGGGCTTGCAAAGCCCGTAATAATGGTTTGTGCTTGTCTTCGAGAGCAGTTGGCTGTTGTGCAGTTAAAAGGCTTACTGACATTGAAGAAGACATTGTTCAATCATCTTGTTCATGTGCCCCTGCATTGGGTGCAAGGGAAGGTCCAAAATCAGATCCTGAAACTAATGCTAATGCCAAGAGGCCAGCCATACGAAATGTACCGATGCCATGCAGAAGCTGTGATGGCCATATTGCTTCAGAGACTGTTAATATCCAGCAACAATGTTGTGGTGATCAGTCCTGCCATGTTCCAGCTTTAGGAGTAAACATCAAGAATCTGGGGTTAAGTTCTATTTTCACATCCAAGTCTATGCGATCCTTATCTCCCAGCTCTTTTGCACCATCTCTTAATTCCAGCCTTTTTTCATGGGAAACGGATTGTGCCTCTTCTGATGTTGGCTCTGCAGGACGTCCCATTGATACTATTTTTAAATTTCACAAAGCTATACGCAAAGACTTGGAATATTTAGATGTTGAATCTGGAAAACTTATTGATTGTGATGGAACTTTTCTCCGGCAATTTATCGGAAGATTTCGTCTTCTATGGGGGTTATATAGAGCTCATAGTAATGCTGAAGATGATATTGTATTTCCTGCTCTGGAATCCAAAGAGACATTGCACAATGTAAGTCACTCGTATACACTGGATCATAAGCAGGAGGAAAAATTATTTGAGGACATTTCATGTGTTCTCTCTGAGATTTCACTCCTCCATGAAAGTTTGCATGAGGTTCCGTTGGATGAGAGTTTTCCCAGAAGTGATGTTGGGGCTGTTAATGTGGTGGGGAAGGATTGTAGCAGAAACTACAACGAGCTTGCTACAAAGCTTCAAGGAATGTGCAAATCTATAAGAGTTACTCTGGATCAGCATATATTTAGGGAAGAACTTGAACTTTGGCCACTCTTTGGGAAACACTTCTCCATGGAGGAGCAAGACAAAATAGTTGGACGTATCATTGGAACCACAGGTGCCGAAGTTCTCCAGTCAATGTTGCCATGGGTAACATCAGCACTTACTCAGGACGAACAGAATACTATGATGGATACGTGGAAGCAGGCCACAAAAAACACCATGTTTAATGAATGGCTCAATGAATGTTGGAGAGGGACTGCTTCGTCTACTTTAAATGGTGAAACATCGGAAGCTTGTGTTGCTGAAAAAGATTCTGGGCTCATTGAGAGCTTGGATCAGAATGATCAAATGTTCAAGCCTGGTTGGAAAGATATTTTTCGCATGAACCAAAATGAACTTGAATCAGAAATCAGAAAGGTTTATCAGGACTCGACTCTTGATCCAAGGAGAAAAGCATATCTCGTGCAGAATCTTATGACCAGTCGCTGGATTGCTGCACAGCAGAAATTACCTCAAGCAAATGTAGAAGATAATTCCAATGGTGAAGAGGTAGCAGGGCGAACAGCATCTTTTCGCTGTGCAGAGAAAAATGTGTTTGGGTGTGAACATTACAAAAGAAACTGCAAGCTTCTTGCTGCTTGCTGTGGAAAGTTATTTACCTGTCGATTCTGTCATGACAATGTCAGCGATCACTCAATGGACAGGAAAGCAACATCAGAGATGATGTGCATGAATTGTCTAACAATTCAACCAGTTGGGCCAATATGCACAACACCTTCTTGCAATGGTTTGTCAATGGCGAAATACTATTGCAATATTTGCAAATTTTTTGATGATGAAAGGGCTGTGTATCATTGCCCATTTTGCAACTTATGCCGTGTTGGGAAGGGTCTTGGAATTGATTTTTTCCATTGCATGATTTGCAACTGTTGCCTTGGGATAAAGCTGGAGAGCCATAAGTGCCTGGAGAAAAGTTTAGAAACGAATTGTCCCATCTGTTGTGATTTCTTATTTACATCCAGTGCAACAGTCCGGCCTCTACCCTGTGGTCATTACATGCATTCAGCTTGCTTCCAGGCGTACACTTGCAGCCATTATACCTGTCCTATTTGTAGCAAGTCCTTGGGAGATATGGCGGTTTATTTTGGCATGCTTGACGCCTTGTTGGCTGCTGAGGAGCTGCCGGAAGAGTACAGGGATCGTTGCCAGGACATATTGTGCAATGACTGTGAGAGGAAAGGCACATCGCGGTTCCATTGGCTATATCATAAATGTGGGTTTTGTGGATCATACAACACTCGTGTAATCAAGAATGATACCACATCTGCTGATTGCCCTTCTTCCAATCAGGCTCCTCTATTTTTCCAGCTTACCAAGCTCGAATTCAAGCTCATGGCTATGCCGCCTGATAGATCAAACCCACTTCACAACTTCTCTTTGCCGTATCTCAAATGGGGTTCACAGAGATTCCTCAAGTGTATGAAGGTTTCTTCTAACTCCAACCCTTCTACCCTTGATCATCCTTCTATTCAACGCCAATCGAAATCCTATCAATTCCGAGCCAGACCCATCAATTCTAAGCCCACGAACTTCACCAAGCTTTCTTCTCCGATGAACCCGAATCATTCCAAACAGAAACCAACCAACGATCGAAGCAGTTCCATCGAAATTATGCGAGAGAAGATCATGCTTGATATTAGGGAGGAATCGAAGAGACTGAAGTTTTCAATTGCTGATGAAGGGGGTGAGGATGAATCTGCTGCGGCTCGGCCGTGGAATTTAAGGACTCGCAGAGCAGCATGTAAGGCTCCTCAAGACGAGAGGAATCCGGAATTGGGTTCATCTTCAACCAAGGCTGTAATGAAGAAAAAGGAGAAGAATCGGACTGCGTTATTTGTCTCGCTGTCGAAAGAGGAGCTTGAAGAGGATTTTGCGGTGCTGGTTGGTAGGTTACCGAGGAGGCCAAAGAAGAGGCCAAGAGCTGTACAAAGGCAAATGGATGCACTTTTTCCTGGACTGTTGCTGACTGAAATTACTCTAGATTCATATAAAGTTGATGATGTTCCTGAAGCTTGA | 4494 | 42.88 | MATPLTGLQHRDGGGGVAFLANSVNKMDSASSPSSPKDCLRSSEPQSPILIFLFFHKAIRNELDTLHRLAMAFATGQRADIRPLFERYHFLRSIYKHHSNAEDEVIFPALDIRVKNVAQTYSLEHKGESNLFDHLFELLNCNTQNDESFPRELASCTGALKTSVSQHMAKEEEQVFPLLIEKFSLEEQASLVWQFLCSIPVYMMAQFLPWLSSSVSPDEFQDLQKCLIKVVPEEKLLRQVIFTWMEARSSDNVSTSWCGDSLVGYHTDPTSDTSNHQTGNVNCACESTSHGKRKYLESSSEISDYVATHPINEILFWHNAIKRELNDIAEEARKIQLSGNFSNLSTFNERLQFIAEVCIFHSIAEDKVIFPAVDGEFSFLQEHAEEESQFNAFRCLIENIQSAGASSTSRAEFYVKLCSHADQIMDTIKRHFHNEEVQVLPLARKHFSFKRQRELLYQSLCMMPLKLIERVLPWLVGSVKEDEARDILKNIQLAAPAKDTALVTLFSGWACKARNNGLCLSSRAVGCCAVKRLTDIEEDIVQSSCSCAPALGAREGPKSDPETNANAKRPAIRNVPMPCRSCDGHIASETVNIQQQCCGDQSCHVPALGVNIKNLGLSSIFTSKSMRSLSPSSFAPSLNSSLFSWETDCASSDVGSAGRPIDTIFKFHKAIRKDLEYLDVESGKLIDCDGTFLRQFIGRFRLLWGLYRAHSNAEDDIVFPALESKETLHNVSHSYTLDHKQEEKLFEDISCVLSEISLLHESLHEVPLDESFPRSDVGAVNVVGKDCSRNYNELATKLQGMCKSIRVTLDQHIFREELELWPLFGKHFSMEEQDKIVGRIIGTTGAEVLQSMLPWVTSALTQDEQNTMMDTWKQATKNTMFNEWLNECWRGTASSTLNGETSEACVAEKDSGLIESLDQNDQMFKPGWKDIFRMNQNELESEIRKVYQDSTLDPRRKAYLVQNLMTSRWIAAQQKLPQANVEDNSNGEEVAGRTASFRCAEKNVFGCEHYKRNCKLLAACCGKLFTCRFCHDNVSDHSMDRKATSEMMCMNCLTIQPVGPICTTPSCNGLSMAKYYCNICKFFDDERAVYHCPFCNLCRVGKGLGIDFFHCMICNCCLGIKLESHKCLEKSLETNCPICCDFLFTSSATVRPLPCGHYMHSACFQAYTCSHYTCPICSKSLGDMAVYFGMLDALLAAEELPEEYRDRCQDILCNDCERKGTSRFHWLYHKCGFCGSYNTRVIKNDTTSADCPSSNQAPLFFQLTKLEFKLMAMPPDRSNPLHNFSLPYLKWGSQRFLKCMKVSSNSNPSTLDHPSIQRQSKSYQFRARPINSKPTNFTKLSSPMNPNHSKQKPTNDRSSSIEIMREKIMLDIREESKRLKFSIADEGGEDESAAARPWNLRTRRAACKAPQDERNPELGSSSTKAVMKKKEKNRTALFVSLSKEELEEDFAVLVGRLPRRPKKRPRAVQRQMDALFPGLLLTEITLDSYKVDDVPEA | 1497 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 26522828 | 26537974 | + | CmPI595203_06g015260.1 | Cmu06g1526 | 419186 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmu06g1526 | 1497 | ProSiteProfiles | Zinc finger CHY-type profile. | 1000 | 1069 | IPR008913 | GO:0008270(InterPro) | |
Cmu06g1526 | 1497 | Pfam | Protein of unknown function (DUF1639) | 1441 | 1489 | IPR012438 | - | |
Cmu06g1526 | 1497 | ProSiteProfiles | Zinc finger CTCHY-type profile. | 1072 | 1135 | IPR017921 | - | |
Cmu06g1526 | 1497 | SUPERFAMILY | CHY zinc finger-like | 1001 | 1063 | IPR037274 | GO:0008270(InterPro) | |
Cmu06g1526 | 1497 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 1129 | 1180 | IPR013083 | - | |
Cmu06g1526 | 1497 | Pfam | Zinc-ribbon | 1183 | 1240 | IPR039512 | - | |
Cmu06g1526 | 1497 | SMART | ring_2 | 1136 | 1177 | IPR001841 | - | |
Cmu06g1526 | 1497 | Pfam | CHY zinc finger | 1007 | 1075 | IPR008913 | GO:0008270(InterPro) | |
Cmu06g1526 | 1497 | CDD | RING-H2_Pirh2-like | 1135 | 1178 | - | - | |
Cmu06g1526 | 1497 | CDD | Hr-like | 51 | 177 | - | - | |
Cmu06g1526 | 1497 | SUPERFAMILY | RING/U-box | 1135 | 1181 | - | - | |
Cmu06g1526 | 1497 | Gene3D | - | 1207 | 1251 | - | - | |
Cmu06g1526 | 1497 | Gene3D | nmb1532 protein domain like | 46 | 197 | - | - | |
Cmu06g1526 | 1497 | Gene3D | nmb1532 protein domain like | 312 | 459 | - | - | |
Cmu06g1526 | 1497 | MobiDBLite | consensus disorder prediction | 1406 | 1427 | - | - | |
Cmu06g1526 | 1497 | Pfam | Ring finger domain | 1135 | 1177 | IPR001841 | - | |
Cmu06g1526 | 1497 | Pfam | Hemerythrin HHE cation binding domain | 310 | 443 | IPR012312 | - | |
Cmu06g1526 | 1497 | Pfam | Hemerythrin HHE cation binding domain | 52 | 179 | IPR012312 | - | |
Cmu06g1526 | 1497 | Pfam | Hemerythrin HHE cation binding domain | 660 | 822 | IPR012312 | - | |
Cmu06g1526 | 1497 | ProSiteProfiles | Zinc finger RING-type profile. | 1136 | 1178 | IPR001841 | - | |
Cmu06g1526 | 1497 | CDD | Hr-like | 313 | 441 | - | - | |
Cmu06g1526 | 1497 | MobiDBLite | consensus disorder prediction | 1329 | 1358 | - | - | |
Cmu06g1526 | 1497 | SUPERFAMILY | Zinc hairpin stack | 1073 | 1129 | IPR037275 | - | |
Cmu06g1526 | 1497 | CDD | Hr-like | 662 | 822 | - | - | |
Cmu06g1526 | 1497 | PANTHER | RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 | 695 | 1242 | - | - | |
Cmu06g1526 | 1497 | Gene3D | nmb1532 protein domain like | 655 | 887 | - | - | |
Cmu06g1526 | 1497 | FunFam | Zinc finger protein-related isoform 1 | 1131 | 1180 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmu06g1526 | Cmu-Chr6:26522828 | Cmu09g0605 | Cmu-Chr9:5537593 | 2.00E-40 | dispersed | |
Cmu01g0419 | Cmu-Chr1:4375369 | Cmu06g1526 | Cmu-Chr6:26522828 | 2.30E-13 | transposed | |
Cmu06g1697 | Cmu-Chr6:28014093 | Cmu06g1526 | Cmu-Chr6:26522828 | 5.10E-223 | transposed | |
Cmu05g2315 | Cmu-Chr5:32433551 | Cmu06g1526 | Cmu-Chr6:26522828 | 3.60E-27 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmu06g1526 | K16276 | - | csv:101215023 | 2427.9 |