Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu06g1531 ATGGCTGATCATGATTTCACCTCCTTCCCTCTTGAAGATCCAAATTTAGAGCTCATGGCTTCTCACTTTTCTCCTTCAATTCCCAGTTTCACTCACTTTTTACCATTTTCCACTACTACTACCACTACTGATATGTTTTTCCCTTCTCACCAAACCCCACCAAATTTTCCAGAAACTACTAACTTCACTACTTCCCCTGTTTTCCCATCTCACTCTGTTTTGCCACCTGCTCCTTCCTCTGTTTCTACTCATCACTTTCATGATCTCAACAAGAGAAAATCTATGGATGTTTCAGAAAGTACTTCCGGAATTTCAACTCCTCAAGTTTCTGAAACTGGGTTCAAGACTAAATATAGCTCTGGGAAAGGGAAGAGATTGAAAGGTGTTGAGAAAGAAGAGGAGAAATCAACTAGAGAAGTGGTTCATGTTAGAGCTAGAAGAGGCCAAGCCACTGATAGCCACAGCTTGGCAGAAAGGGTGAGAAGAGGAAAAATCAATGAAAGACTAAGATGCTTGAAAGACATTGTCCCAGGTTGCTACAAGACCATGGGTATGGCAGTAATGTTGGATGAGATAATTAATTATGTCCAGTCTCTGCAGAATCAAGTGGAGTTCCTCTCCATGAAACTTGCTGCAGCTAGCTCTTTCTATGACTTTAACTCAGAGGCAGATACCATATCAAAATTACAGAAGGCAAAGGCACATGAAGCAAAAGAATTGGAGAGATTGATGAGAGAAGGATATGGAGGAATAGCTTGCTTCCACTCAAATCTGCCCCTTTGA 783 41.25 MADHDFTSFPLEDPNLELMASHFSPSIPSFTHFLPFSTTTTTTDMFFPSHQTPPNFPETTNFTTSPVFPSHSVLPPAPSSVSTHHFHDLNKRKSMDVSESTSGISTPQVSETGFKTKYSSGKGKRLKGVEKEEEKSTREVVHVRARRGQATDSHSLAERVRRGKINERLRCLKDIVPGCYKTMGMAVMLDEIINYVQSLQNQVEFLSMKLAAASSFYDFNSEADTISKLQKAKAHEAKELERLMREGYGGIACFHSNLPL 260
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 26575751 26577420 + CmPI595203_06g015310.1 Cmu06g1531 419191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu06g1531 260 Gene3D - 146 217 IPR036638 GO:0046983(InterPro)
Cmu06g1531 260 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 93 233 IPR024097 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)
Cmu06g1531 260 MobiDBLite consensus disorder prediction 93 155 - -
Cmu06g1531 260 FunFam transcription factor BEE 3-like 146 217 - -
Cmu06g1531 260 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 147 217 IPR036638 GO:0046983(InterPro)
Cmu06g1531 260 MobiDBLite consensus disorder prediction 96 117 - -
Cmu06g1531 260 Coils Coil 226 246 - -
Cmu06g1531 260 CDD bHLH_AtBPE_like 139 224 - -
Cmu06g1531 260 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 149 199 IPR011598 GO:0046983(InterPro)
Cmu06g1531 260 Pfam Helix-loop-helix DNA-binding domain 153 200 IPR011598 GO:0046983(InterPro)
Cmu06g1531 260 SMART finulus 155 205 IPR011598 GO:0046983(InterPro)
Cmu06g1531 260 MobiDBLite consensus disorder prediction 123 155 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu06g1531 Cmu-Chr6:26575751 Cmu06g1866 Cmu-Chr6:29453668 1.10E-26 dispersed
Cmu05g1249 Cmu-Chr5:13423372 Cmu06g1531 Cmu-Chr6:26575751 1.40E-34 transposed
Cmu08g0457 Cmu-Chr8:15218539 Cmu06g1531 Cmu-Chr6:26575751 3.90E-38 transposed
Cmu04g1152 Cmu-Chr4:26074358 Cmu06g1531 Cmu-Chr6:26575751 3.00E-51 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6418 PF00010 HLH 4.30E-05 No_clan Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu06g1531 - - - 0.0