Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu06g1539 ATGCGTATGAGCTGTAACGGATGCAGAGTTCTTCGCAAAGGCTGCAGTGAGAGCTGCTCCATCAGACCCTGTCTTCAATGGATCAAATCCCCCCAATCCCAAGCCAACGCCACTTTCTTCCTCGCCAAATTCTACGGCCGAGCTGGCCTTGTTAACCTCATCAATGCCGGCCCTGACCATCTCCGCCCAGCTATTTTTAAATCATTGCTTTTCGAGGCGTGTGGCCGGATTGTGAATCCCATTTTTGGGTCCGCTGGATTGTTGTGGTCTGGGAGCTGGCAGCTCTGTCAGGACGCCGTCGAAGCAGTTCTGAAAGGGGCGCCGATTCTGCCGGTTTCTTCCGAGACGGCGGCGTCGCACATGGGTCCACCCTTGAAAGGCTGCGATATCCGCCATGTCTCCAAACAGCAAAGCTCCGCCTCTGGTTCCGCACTTAAAAAGATCAAGACGCGGCGGCGGTTCAAACGCTCTGCGGTGGCGGTCAAGTCGAAGCCGAAGGAGGAGCCGGTGGTGGTGGTGTCGGAGTTCAAATTCGGAGACCCGACCCGGATTGTATCGGAGCCCCGGTGTTTGAAGTTTGAGTTGGATAATTGGGGGGGTCGTGAGTCGCCGGAGAAGGAGTGCGGCAGCGACCACACCGAGTGCTTGTCGGTGGAGACGGTGGAGGCTTCTTCGGTGGGCCAGGGTGGTGACGTGGAGTTGGAACTTACCTTGGGGTTTGGGCACAGTCGGATGCTGACTTATGACAATAGAGTTAAGCGGGATATTACCGTTGACAATTGTCTCGAAGTCCCCAATGTCGGCAAGAGTGGTGGGCTAATGTTGCTATGGAATAACGATGTGGATGCCAATGTTTACGTGTGGTCTGGTCATCGAAACATTGATACTACCAAGTTTTGCAAGATTTCGAGGTTCTGCTTGGAAAAATTAGCATATTGGAACCGTGGACGTCTTAATGGGTCTCTAAAAGGGGGTATTGCCAGAAAAGAACAGGAAATTCAGGAGATCAGATCCTTGTTCCCTTTCTCTGCGTCTGAGATTGAAGCAGTCGTGAAGAATATGGCCTTGCTGAAAGCTCCTGGGCCTAACGATTTGAATGCTTTTTCCTTTCAAAAGTATTGGATTGAAGTGGGAGCTACCACTGTCAACTTGTGTCTAAATATTCTGAATGGGGAGGAAATGATTGGGGGATTAAATTCCACATCTATTGTCCCCAATCCGAAGAACATTAAGCCAAAAACAATGCGAACTAGAAAATCCGGGGTGGCAGAGGTAAAACTTGATATGAGTAAAGCATACGATTGGGTGGAATGGAGTTACCTTCAGAGAAGGAACACCAAGCGAAGTTCTCAGGTTTCTAAAGGATCGTGTTTAGAAGGTCCTTCAAGGTTGGAAGGAGAGATCTTATCCTGA 1413 50.32 MRMSCNGCRVLRKGCSESCSIRPCLQWIKSPQSQANATFFLAKFYGRAGLVNLINAGPDHLRPAIFKSLLFEACGRIVNPIFGSAGLLWSGSWQLCQDAVEAVLKGAPILPVSSETAASHMGPPLKGCDIRHVSKQQSSASGSALKKIKTRRRFKRSAVAVKSKPKEEPVVVVSEFKFGDPTRIVSEPRCLKFELDNWGGRESPEKECGSDHTECLSVETVEASSVGQGGDVELELTLGFGHSRMLTYDNRVKRDITVDNCLEVPNVGKSGGLMLLWNNDVDANVYVWSGHRNIDTTKFCKISRFCLEKLAYWNRGRLNGSLKGGIARKEQEIQEIRSLFPFSASEIEAVVKNMALLKAPGPNDLNAFSFQKYWIEVGATTVNLCLNILNGEEMIGGLNSTSIVPNPKNIKPKTMRTRKSGVAEVKLDMSKAYDWVEWSYLQRRNTKRSSQVSKGSCLEGPSRLEGEILS 470
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 26649842 26653815 + CmPI595203_06g015390.1 Cmu06g1539 419199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu06g1539 470 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 240 - GO:0010468(PANTHER)
Cmu06g1539 470 Pfam Lateral organ boundaries (LOB) domain 4 102 IPR004883 -
Cmu06g1539 470 ProSiteProfiles LOB domain profile. 3 109 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g1693 Cmu-Chr1:30663968 Cmu06g1539 Cmu-Chr6:26649842 3.10E-41 transposed
Cmu05g1264 Cmu-Chr5:13840253 Cmu06g1539 Cmu-Chr6:26649842 9.00E-73 transposed
Cmu05g2111 Cmu-Chr5:30632392 Cmu06g1539 Cmu-Chr6:26649842 6.30E-38 transposed
Cmu10g1510 Cmu-Chr10:10243717 Cmu06g1539 Cmu-Chr6:26649842 1.60E-08 transposed
Cmu05g2328 Cmu-Chr5:32521317 Cmu06g1539 Cmu-Chr6:26649842 9.00E-53 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6420 PF03195 LOB 2.20E-21 No_clan Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu06g1539 - - - 0.0