Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu06g1554 ATGGTGGTTGAGAAACGCGGGAGGGCGTGTGTGTTGAAGAGGGGTGGAGGGCTTTTTGAGGTGAAGGAAGTTGTGCGTGGAGGAGGAATGACTTGGAGAAGAGTGTTGAAGTCCGTGCAGGCACTTTTGGCCCACGGTTCACTCTTCTGTTTCACGCTCTTGCTCGTTCTCAAGCTCGATCATTTCGTCTCCCACAGTTGGTGGGTTATATTTTTTCCCCTTTGGGTGTTTCATGTGGTTGTTGCTCGAGGAAGGTTCTCATTACCTGCCCCATCTCTTCCGCATAATCGTCATTGGGCACCGTGTCATGCTGTTGTTGCCACACCTTTGCTTATAGCATTTGAATTACTTCTTTGTATATACCTCGAAAGCCTATCTGTTTATGGTTTTGCTGCTGTGAACTTGAAGATTGTCTTTCTACCGTTGCTGGCATTTGAAATCATTGTTTTAATTGATAATTTCAGAATGTGTAGGTCACTGATGCCTGGTGACGATGAAAGCATGAGCGATGAGGCAATATGGGAGACACTGCCTCACTTTTGGATTGCTATTTCAATGGTCTTCTTTGTTGCTGCTACAGTATTTACTCTATTGAAGCTATGTGGGAATGTTGGTGCTCTTGGCTGGTGGGACTTATTTATAAATTTTGGCATTGCCGAGTGCTTTGCGTTTCTTGTATGTACAAAGTGGTCTAATCCAGCGATTCATAGAAACATTCAGACAAGAGAACGTTGTTCATCATCAGCAGTAGTTAGATATCTAGATTGGAACAGTGGTCTAATAGTTTATCCAGAGCAGGATCAGCATCAGGACAGAATGTGTGGCCTTCAAGACATTGGAGGCCATATCATGAAAATTCCCATAATTGTTTTCCAAATCCTACTCTGCATGTATTTAGAGGGAACGCCTGCGGGTGCTAAAAGTATGCCACTTCCCGTCCTTTTCTCGCCCCTTTTTATATTGCAAGGTGCTGCTGTTATTTATGCTGCATCTAGATTGTTAGAGAAAGCTGTACTTCTCTTAAGAGGTGGATCTGGCACAGCATTGTATTTCAGTTTTTCAGTTAGGGCTCATGCCTGTTTGGAGTTCTTTCATCATGGTTCAAGGCTATTGGGGTGGTGGTCAATTGATGAAGGCAGTCGAGAGGAGCAGGCACGATTGTACCATGAGGGTGCCTCTGGGTACAATACTTTTAGTGGATATCCTCCTGAGATTGTGAAGAAGATGCCCAAGAAAGATCTAGCAGAGGAGGTCTGGCGCCTTCAAGCTGCACTTGGGGAGCAGACAGAAATCACCAAATACAGTCAGCAGGAATATGAAAGGCTTCAAAATGAAAAGGTGTTATGTCGGGTTTGTTTCGAGGGAGAAATTAGCGTGGTTCTTCTTCCATGTAGGCATCGCGTACTATGCAGTTCCTGCTGTGAGAAGTGTAAAAAGTGCCCAATATGTCGCGTGGTTATCGAAGAAAGTCCAATCCCGAAACGATACTTGTTTCTCGTCGATCCAGATTGGTTCAGGCTGGAATTTGATTGTTACTGGGGTCGTCAGTTTAGGTTTTCCAGTACATTGTTTCGCCTGGCGCTGATTATTTTCAGTGCGCATCTAAGTGGGGGAAAACACGTGAATTATTAG 1632 44.49 MVVEKRGRACVLKRGGGLFEVKEVVRGGGMTWRRVLKSVQALLAHGSLFCFTLLLVLKLDHFVSHSWWVIFFPLWVFHVVVARGRFSLPAPSLPHNRHWAPCHAVVATPLLIAFELLLCIYLESLSVYGFAAVNLKIVFLPLLAFEIIVLIDNFRMCRSLMPGDDESMSDEAIWETLPHFWIAISMVFFVAATVFTLLKLCGNVGALGWWDLFINFGIAECFAFLVCTKWSNPAIHRNIQTRERCSSSAVVRYLDWNSGLIVYPEQDQHQDRMCGLQDIGGHIMKIPIIVFQILLCMYLEGTPAGAKSMPLPVLFSPLFILQGAAVIYAASRLLEKAVLLLRGGSGTALYFSFSVRAHACLEFFHHGSRLLGWWSIDEGSREEQARLYHEGASGYNTFSGYPPEIVKKMPKKDLAEEVWRLQAALGEQTEITKYSQQEYERLQNEKVLCRVCFEGEISVVLLPCRHRVLCSSCCEKCKKCPICRVVIEESPIPKRYLFLVDPDWFRLEFDCYWGRQFRFSSTLFRLALIIFSAHLSGGKHVNY 543
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 26770920 26781056 - CmPI595203_06g015540.1 Cmu06g1554 419214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu06g1554 543 SUPERFAMILY RING/U-box 440 490 - -
Cmu06g1554 543 SMART ring_2 449 483 IPR001841 -
Cmu06g1554 543 PANTHER TRANSMEMBRANE FRAGILE-X-F-ASSOCIATED PROTEIN 30 490 - -
Cmu06g1554 543 Pfam Zinc finger, C3HC4 type (RING finger) 446 489 - -
Cmu06g1554 543 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 425 491 IPR013083 -
Cmu06g1554 543 Pfam Transmembrane Fragile-X-F protein 57 321 IPR019396 -
Cmu06g1554 543 ProSiteProfiles Zinc finger RING-type profile. 449 484 IPR001841 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu06g1554 - - - 0.0