Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu06g1580 ATGTTTCTGTCGTCCTTCCTTCGATTTTTTACCTGCATTTGGCAATTGCAACAGCATCTCACACATGGGGCTAAAGCAAAAAACCCCTCCTCCCACAAAGAGAAGGGAAAAGTCTGTGCGAATCACTCACAGCAACGCATTCAAGTCGTTTGTAGCTTTCTCCACCTGTCTTCCTTTTGGCCAGTCGATCGCGACCCATTAGTTCAGAGAATCGGAACACATGTCCTCTCACTCAGACGCCCCACCATTCATGTTCATGAAAAAGGAACACCCATTTACGAAAAGGGGAAGACCCCACTTGAAAACATCCAAAAATTAGTGCTCAGCCATTCGTTTGAATTTCAGAAACCAGGCAGAAGCTACAGAAATTCAACAGCGCTTACTGTTATTACTGAGAATAGTTCTTGTTCTTTCTTCCATAAGCAAACAGAAAAAACTTCTAAATGGCTCAAGATACGTCTCCTAGCATTGAATCACCTCGGAGGCGTTCTGGCCTTTTGCGAGATCAAGTTCAGAGTGGCAGGACCATCGGGAGCTGGGAAGACTGTATTTACTGAGAAGGTGCTTAACTTTATACCCAGCATTGCTGTTATCACGATGGATAACTACAATGATTCCAGTCGTATCATTGATGGCAACTTTGATGATCCACGCCTAACAGATTATGATACATTGCTGGAAAATATTAATGGTTTAAGAGAAGGAAAACCTGTCCAGGTTCCTATTTATGATTTCAAGACTAGCAGTCGCGTGGGTTACAGGACTCTTGAAGTTCCCGAATCAAGGATTGTCATTATTGAGGGCATCTATGCTTTAAGTGAAAAATTGCGTCCATTGCTAGATCTTCGTGTATCAGTGACCGGTGGTGTTCATTTTGACTTAGTGAAACGGGTACTACGTGATATTCAGCGAGCTGGCCAAGAGCCAGAAGAAATAATACATCAAGTTTCTGAAACGGTCTATCCAATGTATAAAGCTTTTATTGAGCCAGATCTTCAGACTGCCCATATAAGAATTATTAACAAATTCAATCCCTTTACCGGTTTCCAGAATCCTACTTATATTCTTAAGTCAATGAAAGCAGTACCTGTGGATCAAATTAAGGCTGTTATATCCGAGAATCACAAGGAGTCTACTGAGGAAACTTATGACATTTATCTTCTACCTCCTGGTGAAGATCCTGAAGTGTGTCAATCCTATCTGAGGATGAGGAATAGGGATGGCAAATACAATCTCATGTTTGAGGAGTGGGTTACAGATATTCCATTCATAATATCACCTAGAATAACTTTTGAAGTTAGTGTGCGCCTTCTTGGAGGGCTTATGGCACTTGGATACACAATTGCCACTATTCTTAAAAGAAGCAGCCACATATTCTCTGATGATAGGGTGTGTATAAAGATTGATTGGTTGGAGCAACTTAACCGAAAATACATTCAGGTGCAAGGAAAAGATCGGGTGCACGTTAAATGTGTTGCTGAGCAGTTGGGTTTGGATGGTTCCTATATCCCTCGAACTTATATTGAACAGATACAGCTGGAGAAGCTTGTTAATGATGTTATGGCCTTGCCGGATGATTTAAAAACCAAGCTCAGCATAGACGACGAGTCACTTTCGAGTCCAAAGGAAGCACTTTCCCGAGCTTCTGCAGATAGGAGAAATAAGTACCTTAACCGTGGCTTATCACAATCATTTTCAAATCGGAGGGACAAGACCTTGTCAAAGCTTACAAAGCTTGCTGTTAATAATAGGAGATTTGATGTGAGGGCTCCAGATTCCCCTGCAGTAGTCTCTAACCAGGGAGCTATTACTCAACTTTCAGAACAGATTTCTACTCTCAGTGAGAGAATGGATGAGTTCACAACTCGTATTGAAGAGCTGAACTCTAAGATCTGTACTAGAAAAATTTCTGCTAGCCAGCAGAACTTGGTTTCACAATCCGATGCGTGCAACAATGGCTCCGGAGCAACTTCAATTTTCATATCTGGCTTGAGTAACGGTGCCTTAACCGGATCGCTACTGCCTCATTCTTCATCATCCTCCCAATTGGCCAAGGAATCTCCCTTTCTGGAAGAGATACAAAACATAGCACGGGCGCAGCGTCAAATCATTCTCCAAGTCGACAATTTGAGCAATCTTCTCCGGGAGCACTTGAGTGAGAGGGGTCGCCGGGGAAAAGTTGACGACGAAGGGAGGTGGAGGATTACTGATCTTGAATCCATCAGCACCCCACTTTTGCTTACACTTGCAGTTGAAAAGTCAACCATGCCGACCGTCAGCGTCGGAAGAGATCTTCTATTTGCTGCCATTGGAAGAACTTATACGCAGGAAGAGTTTGAAGAGCTGTGCTTTAGTTTTGGAATTGAGCTTGATGACGTTACGACAGAGAAGGCGATCATTAGGAAAGAGAAGCATTTGGAAGAAGAAGCGGATGAAGATGAAGAAGTCATCTACAAGATTGAAGTCCCCGCAAACAGATACGATTTGCTCTGTCTTGAAGGACTTGCTCAAGCCCTGCGCATTTTTAATAAGCAGGAGGAGACACCCAGATATACATTAGCCAATATCAGCAGGGAATCTATGCATAAAATGCATGTAAAACCGGAGACTTCCTTGATCCGTCCTTACATCGTTTGTGCTGTTTTGAGAGACATGACTTTTGATGAAGCAATTTATGCGAGTTTCATTGATCTGCAAGAGAAACTTCATCAGAACATATGTCGACGAAGAAGTCTTGTTGCCATTGGAACACACGACCTGGATACACTTGAAGGCCCTTTCACCTATGAGGCTTTGCCACCAACAGCTATAAACTTTGTGCCACTGAAACAGACGAAGAATTTCAGAGCTGATGAGCTAATGGAGTTCTATAAATCAGATTTAAAGCTGAGGAAGTACTTGCCCATAATAGAAAAATCACCTGTATATCCCATTTTGTATGACCGCAACAGAACTGTTTTGTCTTTGCCACCAATTATCAATGGTGCACATTCGGCTATTACATTGAAGACAAAGAATGTGTTTATTGAATGCACCGCGACTGATCTGACAAAGGCAAATATTGTCTTGAATACTATGGTAACTATGTTTTCAACGCTGTGCAAAAAGAAGTTTGAAATTGAACCAGTTGAAGTGATATATCCGGATGGCAGGTCGTGTATTTATCCAGAGCTATCTCTCTACAATATGGAAGTTTCTGTGTCTTATATCAATAAGTGTATTGGAGTCTCATTGGAGGCAGAAGAGGTTATCAATTTGTTAAATAGGATGCAATTGCACGCTGAACAGTCAGTATCTGGTGACAAGTCTAGTATAACTATATCTGTGCCCCCAACAAGGAGTGATGTGCTTCACCCATGTGACGTCATGGAGGATGTTGCTATTGCTTATGGGTATAATAACATCTCAAAGAGTAAACCAGCATCTTTGCAGCCTCTACCATTAAATGAGTTCAGTGACCTTATTAGAGGAGAGATTGCAATGAGTGGGTTCACGGAGGTACTTACGTGGATCCTATGTTCTTATAAAGAGAACTTCGCCATGCTAAAGCGTGAAGATGATAAATCTACCGCTGTTGTCATTGGAAATCCTCGTTCAACTGATTTTGAGGTTGTACGAACCAGTCTTATGCCTGGTCTTTTGAAAATTGTTGGACACAATAAGGATCACCCAAAGCCCATAAAGATATTTGAAGTTGGTGATGTATCATTGCTGGATGATGCAAAAGATGTTGGGGCAAGAAATCATCGTCATCTTGCTGCTCTATATTGCGGTGCCAATTCTGGATTTGAATTGATTCACGGTTTGGTCGACCGAATTATGGAAGTCGTAGGAGCTCCTTTTGTTTCAGTTGGCGATGAAACTGGAACCCGGAGTTTCTTACTGGTAGACAAGCTCACATCATTTATAAAGGAAAGAAAATTGGCACGTTTGGCATTGTTCATCCCGAGGTTTTGGATAACTTCGACATTCCCGATCCATGTTCCTTTGTTGAACTTAGCATCGAGATCTTTTTGTAGTATTCATTCCACAGTCGATGAGACGTGTTTCTGGGTTTTCCTCAGCTAA 4068 41.96 MFLSSFLRFFTCIWQLQQHLTHGAKAKNPSSHKEKGKVCANHSQQRIQVVCSFLHLSSFWPVDRDPLVQRIGTHVLSLRRPTIHVHEKGTPIYEKGKTPLENIQKLVLSHSFEFQKPGRSYRNSTALTVITENSSCSFFHKQTEKTSKWLKIRLLALNHLGGVLAFCEIKFRVAGPSGAGKTVFTEKVLNFIPSIAVITMDNYNDSSRIIDGNFDDPRLTDYDTLLENINGLREGKPVQVPIYDFKTSSRVGYRTLEVPESRIVIIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRAGQEPEEIIHQVSETVYPMYKAFIEPDLQTAHIRIINKFNPFTGFQNPTYILKSMKAVPVDQIKAVISENHKESTEETYDIYLLPPGEDPEVCQSYLRMRNRDGKYNLMFEEWVTDIPFIISPRITFEVSVRLLGGLMALGYTIATILKRSSHIFSDDRVCIKIDWLEQLNRKYIQVQGKDRVHVKCVAEQLGLDGSYIPRTYIEQIQLEKLVNDVMALPDDLKTKLSIDDESLSSPKEALSRASADRRNKYLNRGLSQSFSNRRDKTLSKLTKLAVNNRRFDVRAPDSPAVVSNQGAITQLSEQISTLSERMDEFTTRIEELNSKICTRKISASQQNLVSQSDACNNGSGATSIFISGLSNGALTGSLLPHSSSSSQLAKESPFLEEIQNIARAQRQIILQVDNLSNLLREHLSERGRRGKVDDEGRWRITDLESISTPLLLTLAVEKSTMPTVSVGRDLLFAAIGRTYTQEEFEELCFSFGIELDDVTTEKAIIRKEKHLEEEADEDEEVIYKIEVPANRYDLLCLEGLAQALRIFNKQEETPRYTLANISRESMHKMHVKPETSLIRPYIVCAVLRDMTFDEAIYASFIDLQEKLHQNICRRRSLVAIGTHDLDTLEGPFTYEALPPTAINFVPLKQTKNFRADELMEFYKSDLKLRKYLPIIEKSPVYPILYDRNRTVLSLPPIINGAHSAITLKTKNVFIECTATDLTKANIVLNTMVTMFSTLCKKKFEIEPVEVIYPDGRSCIYPELSLYNMEVSVSYINKCIGVSLEAEEVINLLNRMQLHAEQSVSGDKSSITISVPPTRSDVLHPCDVMEDVAIAYGYNNISKSKPASLQPLPLNEFSDLIRGEIAMSGFTEVLTWILCSYKENFAMLKREDDKSTAVVIGNPRSTDFEVVRTSLMPGLLKIVGHNKDHPKPIKIFEVGDVSLLDDAKDVGARNHRHLAALYCGANSGFELIHGLVDRIMEVVGAPFVSVGDETGTRSFLLVDKLTSFIKERKLARLALFIPRFWITSTFPIHVPLLNLASRSFCSIHSTVDETCFWVFLS 1355
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 26990678 27006574 - CmPI595203_06g015800.1 Cmu06g1580 419240

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu06g1580 1355 ProSiteProfiles B5 domain profile. 1058 1137 IPR005147 GO:0000287(InterPro)|GO:0003723(InterPro)|GO:0005524(InterPro)|GO:0006432(InterPro)
Cmu06g1580 1355 Pfam Phe-tRNA synthetase beta subunit B1 domain 756 844 IPR040659 -
Cmu06g1580 1355 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 172 339 IPR027417 -
Cmu06g1580 1355 CDD UMPK_like 173 342 - -
Cmu06g1580 1355 Gene3D Bira Bifunctional Protein; Domain 2 1146 1302 IPR045864 -
Cmu06g1580 1355 PRINTS Uridine kinase signature 327 340 - -
Cmu06g1580 1355 PRINTS Uridine kinase signature 235 250 - -
Cmu06g1580 1355 PRINTS Uridine kinase signature 168 185 - -
Cmu06g1580 1355 PRINTS Uridine kinase signature 291 301 - -
Cmu06g1580 1355 SUPERFAMILY Putative DNA-binding domain 760 848 IPR009061 -
Cmu06g1580 1355 Coils Coil 603 630 - -
Cmu06g1580 1355 Pfam tRNA synthetase B5 domain 1063 1132 IPR005147 GO:0000287(InterPro)|GO:0003723(InterPro)|GO:0005524(InterPro)|GO:0006432(InterPro)
Cmu06g1580 1355 ProSiteProfiles CYTH domain profile. 351 513 IPR023577 -
Cmu06g1580 1355 Pfam CYTH domain 353 507 IPR023577 -
Cmu06g1580 1355 FunFam phenylalanine--tRNA ligase beta subunit 855 1059 - -
Cmu06g1580 1355 Pfam Phenylalanyl tRNA synthetase beta chain CLM domain 1145 1279 IPR041616 -
Cmu06g1580 1355 SUPERFAMILY CYTH-like phosphatases 363 510 IPR033469 -
Cmu06g1580 1355 Gene3D - 855 1059 IPR020825 -
Cmu06g1580 1355 Pfam B3/4 domain 893 1016 IPR005146 GO:0003723(InterPro)|GO:0004826(InterPro)
Cmu06g1580 1355 NCBIfam phenylalanine--tRNA ligase subunit beta 756 1279 IPR004531 GO:0000166(InterPro)|GO:0004826(InterPro)|GO:0005524(InterPro)|GO:0005737(InterPro)|GO:0006432(InterPro)
Cmu06g1580 1355 Gene3D - 756 844 - -
Cmu06g1580 1355 FunFam Phenylalanyl-tRNA synthetase, beta subunit 1061 1135 - -
Cmu06g1580 1355 FunFam Phenylalanine--tRNA ligase beta subunit 756 844 - -
Cmu06g1580 1355 Gene3D - 172 350 IPR027417 -
Cmu06g1580 1355 PANTHER PHENYLALANYL-TRNA SYNTHETASE BETA CHAIN AND LEUCINE-RICH REPEAT-CONTAINING PROTEIN 47 756 1290 IPR045060 GO:0004826(InterPro)|GO:0004826(PANTHER)|GO:0006432(InterPro)|GO:0006432(PANTHER)|GO:0009328(PANTHER)
Cmu06g1580 1355 SMART B5_2 1060 1132 IPR005147 GO:0000287(InterPro)|GO:0003723(InterPro)|GO:0005524(InterPro)|GO:0006432(InterPro)
Cmu06g1580 1355 Gene3D - 1061 1135 - -
Cmu06g1580 1355 SMART B3_4_2 873 1035 IPR005146 GO:0003723(InterPro)|GO:0004826(InterPro)
Cmu06g1580 1355 FunFam phenylalanine--tRNA ligase beta subunit 1146 1309 - -
Cmu06g1580 1355 SUPERFAMILY Putative DNA-binding domain 1062 1136 IPR009061 -
Cmu06g1580 1355 SUPERFAMILY Class II aaRS and biotin synthetases 1129 1282 IPR045864 -
Cmu06g1580 1355 Pfam Phosphoribulokinase / Uridine kinase family 173 339 IPR006083 GO:0005524(InterPro)|GO:0016301(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu06g1580 K00876 - - csv:101210506 1077.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu06g1580 Cmu-Chr6:26990678 Cmu11g0126 Cmu-Chr11:1806861 1.80E-48 dispersed
Cmu05g2385 Cmu-Chr5:33073432 Cmu06g1580 Cmu-Chr6:26990678 5.30E-227 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g401 . . Bda06g00500 . . . . Bma12g00949 . . Cma10g00267 . Car10g00251 . . . . Bhi02g00039 . . . . . . Cla06g01510 Cam06g1665 Cec06g1726 Cco06g1722 Clacu06g1631 Cmu06g1580 Cre06g2390 . . . Cone19ag0020 . . . . . Blo15g00353 . . . . . . . Cmo10g00286 . . . . . . Cpe18g00729 . . . . . . . . . . . . . . Lsi06g01373 Csa01g00315 Chy02g02425 Cme02g01791
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005974 1 2 1 1 0 1 2 1 1 1 1 1 2 2 1 2 1 1 2 1 1 1 1 2 2 2 1 1 2 1 39